RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 CRTAC1Q9NQ79 661 aa16.09■□□□□ 0.17
LDLR-204ENST00000545707 STX16-NPEPL1H3BU86 382 aa16.08■□□□□ 0.17
LDLR-204ENST00000545707 AP1G2O75843 785 aa16.08■□□□□ 0.17
LDLR-204ENST00000545707 GABRB3P28472 473 aa16.08■□□□□ 0.17
LDLR-204ENST00000545707 GSTT1P30711 240 aa16.08■□□□□ 0.17
LDLR-204ENST00000545707 PPIDQ08752 370 aaKnown RBP16.08■□□□□ 0.17
LDLR-204ENST00000545707 USP10Q14694 798 aaKnown RBP16.08■□□□□ 0.17
LDLR-204ENST00000545707 R3HDM1Q15032 1099 aaKnown RBP16.08■□□□□ 0.17
LDLR-204ENST00000545707 DUSP28Q4G0W2 176 aa16.08■□□□□ 0.17
LDLR-204ENST00000545707 SHCBP1Q8NEM2 672 aa16.08■□□□□ 0.17
LDLR-204ENST00000545707 PCDHGB4Q9UN71 923 aa16.08■□□□□ 0.17
LDLR-204ENST00000545707 RUVBL2Q9Y230 463 aaKnown RBP16.08■□□□□ 0.17
LDLR-204ENST00000545707 IPPQ9Y573 584 aa16.08■□□□□ 0.17
LDLR-204ENST00000545707 PCDHGB5Q9Y5G0 923 aa16.08■□□□□ 0.17
LDLR-204ENST00000545707 MYBPHLA2RUH7 354 aa16.08■□□□□ 0.16
LDLR-204ENST00000545707 TMEM233B4DJY2 109 aa16.08■□□□□ 0.16
LDLR-204ENST00000545707 MATN2O00339 956 aa16.08■□□□□ 0.16
LDLR-204ENST00000545707 YBX3P16989 372 aaKnown RBP eCLIP16.08■□□□□ 0.163e-9■□□□□ 8.2
LDLR-204ENST00000545707 TFEBP19484 476 aa16.08■□□□□ 0.16
LDLR-204ENST00000545707 THOP1P52888 689 aa16.08■□□□□ 0.16
LDLR-204ENST00000545707 SEMA3BQ13214 749 aa16.08■□□□□ 0.16
LDLR-204ENST00000545707 CTBP1Q13363 440 aa16.08■□□□□ 0.16
LDLR-204ENST00000545707 SNX17Q15036 470 aa16.08■□□□□ 0.16
LDLR-204ENST00000545707 CNPY1Q3B7I2 92 aa16.08■□□□□ 0.16
LDLR-204ENST00000545707 FAM219BQ5XKK7 198 aa16.08■□□□□ 0.16
LDLR-204ENST00000545707 ARHGAP36Q6ZRI8 547 aa16.08■□□□□ 0.16
LDLR-204ENST00000545707 KDELC2Q7Z4H8 507 aa16.08■□□□□ 0.16
LDLR-204ENST00000545707 LIMS2Q7Z4I7 341 aa16.08■□□□□ 0.16
LDLR-204ENST00000545707 SLC41A1Q8IVJ1 513 aa16.08■□□□□ 0.16
LDLR-204ENST00000545707 DENND6AQ8IWF6 608 aa16.08■□□□□ 0.16
LDLR-204ENST00000545707 JADE3Q92613 823 aa16.08■□□□□ 0.16
LDLR-204ENST00000545707 SMOQ99835 787 aa16.08■□□□□ 0.16
LDLR-204ENST00000545707 GBA3Q9H227 469 aa16.08■□□□□ 0.16
LDLR-204ENST00000545707 ZDHHC7Q9NXF8 308 aa16.08■□□□□ 0.16
LDLR-204ENST00000545707 FBXW11Q9UKB1 542 aa16.08■□□□□ 0.16
LDLR-204ENST00000545707 TREHO43280 583 aa16.07■□□□□ 0.16
LDLR-204ENST00000545707 GRID2O43424 1007 aa16.07■□□□□ 0.16
LDLR-204ENST00000545707 MT-CYBP00156 380 aaPredicted RBP16.07■□□□□ 0.16
LDLR-204ENST00000545707 FAM200BP0CF97 657 aa16.07■□□□□ 0.16
LDLR-204ENST00000545707 ARSAP15289 507 aa16.07■□□□□ 0.16
LDLR-204ENST00000545707 XRCC1P18887 633 aaPredicted RBP16.07■□□□□ 0.16
LDLR-204ENST00000545707 DAOAP59103 153 aa16.07■□□□□ 0.16
LDLR-204ENST00000545707 MRPS22P82650 360 aaKnown RBP16.07■□□□□ 0.16
LDLR-204ENST00000545707 PDCD2Q16342 344 aaPredicted RBP16.07■□□□□ 0.16
LDLR-204ENST00000545707 LIN52Q52LA3 116 aa16.07■□□□□ 0.16
LDLR-204ENST00000545707 DSELQ8IZU8 1212 aa16.07■□□□□ 0.16
LDLR-204ENST00000545707 PNPLA1Q8N8W4 532 aa16.07■□□□□ 0.16
LDLR-204ENST00000545707 RCN3Q96D15 328 aa16.07■□□□□ 0.16
LDLR-204ENST00000545707 SGF29Q96ES7 293 aa16.07■□□□□ 0.16
LDLR-204ENST00000545707 C1QTNF1Q9BXJ1 281 aa16.07■□□□□ 0.16
LDLR-204ENST00000545707 FTHL17Q9BXU8 183 aa16.07■□□□□ 0.16
LDLR-204ENST00000545707 TLK1Q9UKI8 766 aa16.07■□□□□ 0.16
LDLR-204ENST00000545707 PTGESO14684 152 aa16.07■□□□□ 0.16
LDLR-204ENST00000545707 TIMM44O43615 452 aa16.07■□□□□ 0.16
LDLR-204ENST00000545707 AHSGP02765 367 aa16.07■□□□□ 0.16
LDLR-204ENST00000545707 SRGAP2BP0DMP2 458 aa16.07■□□□□ 0.16
LDLR-204ENST00000545707 WARSP23381 471 aaKnown RBP16.07■□□□□ 0.16
LDLR-204ENST00000545707 PNPLA4P41247 253 aa16.07■□□□□ 0.16
LDLR-204ENST00000545707 ALDH1A3P47895 512 aa16.07■□□□□ 0.16
LDLR-204ENST00000545707 RPL14P50914 215 aaKnown RBP16.07■□□□□ 0.16
LDLR-204ENST00000545707 MPP1Q00013 466 aa16.07■□□□□ 0.16
LDLR-204ENST00000545707 FOLH1Q04609 750 aa16.07■□□□□ 0.16
LDLR-204ENST00000545707 TMC7Q7Z402 723 aa16.07■□□□□ 0.16
LDLR-204ENST00000545707 CNTD1Q8N815 330 aa16.07■□□□□ 0.16
LDLR-204ENST00000545707 SMG8Q8ND04 991 aaKnown RBP16.07■□□□□ 0.16
LDLR-204ENST00000545707 ZMIZ2Q8NF64 920 aa16.07■□□□□ 0.16
LDLR-204ENST00000545707 TKTL2Q9H0I9 626 aa16.07■□□□□ 0.16
LDLR-204ENST00000545707 OR12D3Q9UGF7 316 aa16.07■□□□□ 0.16
LDLR-204ENST00000545707 A0A1B0GVG6 124 aa16.06■□□□□ 0.16
LDLR-204ENST00000545707 TMEM114B3SHH9 223 aa16.06■□□□□ 0.16
LDLR-204ENST00000545707 HDAC3O15379 428 aa16.06■□□□□ 0.16
LDLR-204ENST00000545707 LRIG2O94898 1065 aa16.06■□□□□ 0.16
LDLR-204ENST00000545707 ENO3P13929 434 aaPredicted RBP16.06■□□□□ 0.16
LDLR-204ENST00000545707 KCNE1P15382 129 aa16.06■□□□□ 0.16
LDLR-204ENST00000545707 TCN1P20061 433 aaPredicted RBP16.06■□□□□ 0.16
LDLR-204ENST00000545707 INHBEP58166 350 aa16.06■□□□□ 0.16
LDLR-204ENST00000545707 MS4A2Q01362 244 aa16.06■□□□□ 0.16
LDLR-204ENST00000545707 POU6F1Q14863 301 aa16.06■□□□□ 0.16
LDLR-204ENST00000545707 PDK3Q15120 406 aa16.06■□□□□ 0.16
LDLR-204ENST00000545707 SEL1L3Q68CR1 1132 aa16.06■□□□□ 0.16
LDLR-204ENST00000545707 ZNF280DQ6N043 979 aa16.06■□□□□ 0.16
LDLR-204ENST00000545707 PDZD4Q76G19 769 aaPredicted RBP16.06■□□□□ 0.16
LDLR-204ENST00000545707 ZC3HC1Q86WB0 502 aaKnown RBP16.06■□□□□ 0.16
LDLR-204ENST00000545707 FSTL5Q8N475 847 aaPredicted RBP16.06■□□□□ 0.16
LDLR-204ENST00000545707 CCNYL1Q8N7R7 359 aa16.06■□□□□ 0.16
LDLR-204ENST00000545707 FAM156AQ8NDB6 213 aa16.06■□□□□ 0.16
LDLR-204ENST00000545707 KCTD13Q8WZ19 329 aa16.06■□□□□ 0.16
LDLR-204ENST00000545707 MCMBPQ9BTE3 642 aa16.06■□□□□ 0.16
LDLR-204ENST00000545707 COLEC11Q9BWP8 271 aa16.06■□□□□ 0.16
LDLR-204ENST00000545707 SPATA16Q9BXB7 569 aa16.06■□□□□ 0.16
LDLR-204ENST00000545707 PDHXO00330 501 aa16.06■□□□□ 0.16
LDLR-204ENST00000545707 KIF3CO14782 793 aa16.06■□□□□ 0.16
LDLR-204ENST00000545707 PGM3O95394 542 aa16.06■□□□□ 0.16
LDLR-204ENST00000545707 SLC35E2BP0CK96 405 aa16.06■□□□□ 0.16
LDLR-204ENST00000545707 THRAP10827 490 aa16.06■□□□□ 0.16
LDLR-204ENST00000545707 DPP6P42658 865 aa16.06■□□□□ 0.16
LDLR-204ENST00000545707 SDCCAG8Q86SQ7 713 aaPredicted RBP16.06■□□□□ 0.16
LDLR-204ENST00000545707 CEP97Q8IW35 865 aa16.06■□□□□ 0.16
LDLR-204ENST00000545707 MFN1Q8IWA4 741 aa16.06■□□□□ 0.16
LDLR-204ENST00000545707 MFSD6LQ8IWD5 586 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms