RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 IFNKQ9P0W0 207 aa12.09□□□□□ -0.47
HDAC4-216ENST00000544989 ZNF212Q9UDV6 495 aa12.09□□□□□ -0.47
HDAC4-216ENST00000544989 SNX10Q9Y5X0 201 aa12.09□□□□□ -0.47
HDAC4-216ENST00000544989 WDFY3Q8IZQ1 3526 aa12.09□□□□□ -0.47
HDAC4-216ENST00000544989 CEP192Q8TEP8 1941 aa12.09□□□□□ -0.47
HDAC4-216ENST00000544989 CACNA1EQ15878 2313 aa12.09□□□□□ -0.47
HDAC4-216ENST00000544989 TNRC6BQ9UPQ9 1833 aaKnown RBP12.09□□□□□ -0.47
HDAC4-216ENST00000544989 ATXN2Q99700 1313 aaKnown RBP12.09□□□□□ -0.47
HDAC4-216ENST00000544989 UPK3BL1B0FP48 263 aa12.08□□□□□ -0.48
HDAC4-216ENST00000544989 UPK3BL2E5RIL1 263 aa12.08□□□□□ -0.48
HDAC4-216ENST00000544989 CBX4O00257 560 aa12.08□□□□□ -0.48
HDAC4-216ENST00000544989 DDX3XO00571 662 aaKnown RBP eCLIP12.08□□□□□ -0.48
HDAC4-216ENST00000544989 TM4SF5O14894 197 aa12.08□□□□□ -0.48
HDAC4-216ENST00000544989 OPHN1O60890 802 aa12.08□□□□□ -0.48
HDAC4-216ENST00000544989 RAMP2O60895 175 aa12.08□□□□□ -0.48
HDAC4-216ENST00000544989 LRIG2O94898 1065 aa12.08□□□□□ -0.48
HDAC4-216ENST00000544989 GJB6O95452 261 aa12.08□□□□□ -0.48
HDAC4-216ENST00000544989 PRNPP04156 253 aa12.08□□□□□ -0.48
HDAC4-216ENST00000544989 SRCP12931 536 aa12.08□□□□□ -0.48
HDAC4-216ENST00000544989 CD27P26842 260 aa12.08□□□□□ -0.48
HDAC4-216ENST00000544989 ACSL1P33121 698 aa12.08□□□□□ -0.48
HDAC4-216ENST00000544989 AFF3P51826 1226 aaKnown RBP12.08□□□□□ -0.48
HDAC4-216ENST00000544989 SLC14A1Q13336 389 aa12.08□□□□□ -0.48
HDAC4-216ENST00000544989 TSR1Q2NL82 804 aaKnown RBP12.08□□□□□ -0.48
HDAC4-216ENST00000544989 NLRP14Q86W24 1093 aa12.08□□□□□ -0.48
HDAC4-216ENST00000544989 PLPP6Q8IY26 295 aa12.08□□□□□ -0.48
HDAC4-216ENST00000544989 PCDH20Q8N6Y1 951 aaKnown RBP12.08□□□□□ -0.48
HDAC4-216ENST00000544989 CCDC185Q8N715 623 aa12.08□□□□□ -0.48
HDAC4-216ENST00000544989 TMIEQ8NEW7 156 aa12.08□□□□□ -0.48
HDAC4-216ENST00000544989 OR52K2Q8NGK3 314 aa12.08□□□□□ -0.48
HDAC4-216ENST00000544989 CASKIN2Q8WXE0 1202 aa12.08□□□□□ -0.48
HDAC4-216ENST00000544989 SNX19Q92543 992 aa12.08□□□□□ -0.48
HDAC4-216ENST00000544989 ISG20Q96AZ6 181 aaKnown RBP12.08□□□□□ -0.48
HDAC4-216ENST00000544989 ZNF653Q96CK0 615 aa12.08□□□□□ -0.48
HDAC4-216ENST00000544989 PPP1R16AQ96I34 528 aa12.08□□□□□ -0.48
HDAC4-216ENST00000544989 PSMB7Q99436 277 aa12.08□□□□□ -0.48
HDAC4-216ENST00000544989 SPON2Q9BUD6 331 aa12.08□□□□□ -0.48
HDAC4-216ENST00000544989 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.08□□□□□ -0.484e-6■■■□□ 17.9
HDAC4-216ENST00000544989 MIR1-1HGQ9H1L0 117 aa12.08□□□□□ -0.48
HDAC4-216ENST00000544989 MTG2Q9H4K7 406 aa12.08□□□□□ -0.48
HDAC4-216ENST00000544989 C6orf106Q9H6K1 298 aaPredicted RBP12.08□□□□□ -0.48
HDAC4-216ENST00000544989 TMPRSS4Q9NRS4 437 aa12.08□□□□□ -0.48
HDAC4-216ENST00000544989 RXFP3Q9NSD7 469 aa12.08□□□□□ -0.48
HDAC4-216ENST00000544989 CNOT8Q9UFF9 292 aaKnown RBP12.08□□□□□ -0.48
HDAC4-216ENST00000544989 LCMT1Q9UIC8 334 aa12.08□□□□□ -0.48
HDAC4-216ENST00000544989 PPM1HQ9ULR3 514 aa12.08□□□□□ -0.48
HDAC4-216ENST00000544989 FZD10Q9ULW2 581 aa12.08□□□□□ -0.48
HDAC4-216ENST00000544989 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.08□□□□□ -0.48
HDAC4-216ENST00000544989 DOCK4Q8N1I0 1966 aa12.08□□□□□ -0.48
HDAC4-216ENST00000544989 DSPP15924 2871 aaKnown RBP12.07□□□□□ -0.48
HDAC4-216ENST00000544989 A0A0D9SEW6 157 aa12.07□□□□□ -0.48
HDAC4-216ENST00000544989 A0A1W2PP55 124 aa12.07□□□□□ -0.48
HDAC4-216ENST00000544989 DCDC2BA2VCK2 349 aa12.07□□□□□ -0.48
HDAC4-216ENST00000544989 TMEM191CA6NGB0 347 aa12.07□□□□□ -0.48
HDAC4-216ENST00000544989 WASH4PA8MWX3 477 aa12.07□□□□□ -0.48
HDAC4-216ENST00000544989 CDX4O14627 284 aaPredicted RBP12.07□□□□□ -0.48
HDAC4-216ENST00000544989 PRPSAP2O60256 369 aa12.07□□□□□ -0.48
HDAC4-216ENST00000544989 SNAP91O60641 907 aa12.07□□□□□ -0.48
HDAC4-216ENST00000544989 FSBPO95073 299 aa12.07□□□□□ -0.48
HDAC4-216ENST00000544989 CER1O95813 267 aa12.07□□□□□ -0.48
HDAC4-216ENST00000544989 SKILP12757 684 aa12.07□□□□□ -0.48
HDAC4-216ENST00000544989 CSRP1P21291 193 aaKnown RBP12.07□□□□□ -0.48
HDAC4-216ENST00000544989 EPHB2P29323 1055 aa12.07□□□□□ -0.48
HDAC4-216ENST00000544989 SERPINH1P50454 418 aaKnown RBP12.07□□□□□ -0.48
HDAC4-216ENST00000544989 CCR5P51681 352 aa12.07□□□□□ -0.48
HDAC4-216ENST00000544989 YBEYP58557 167 aaPredicted RBP12.07□□□□□ -0.48
HDAC4-216ENST00000544989 HNRNPDQ14103 355 aaKnown RBP12.07□□□□□ -0.48
HDAC4-216ENST00000544989 POLD3Q15054 466 aaPredicted RBP12.07□□□□□ -0.48
HDAC4-216ENST00000544989 PPM1JQ5JR12 505 aa12.07□□□□□ -0.48
HDAC4-216ENST00000544989 ERMARDQ5T6L9 678 aa12.07□□□□□ -0.48
HDAC4-216ENST00000544989 E4F1Q66K89 784 aaPredicted RBP12.07□□□□□ -0.48
HDAC4-216ENST00000544989 HGSNATQ68CP4 663 aa12.07□□□□□ -0.48
HDAC4-216ENST00000544989 KIAA0895LQ68EN5 471 aa12.07□□□□□ -0.48
HDAC4-216ENST00000544989 SPECC1LQ69YQ0 1117 aa12.07□□□□□ -0.48
HDAC4-216ENST00000544989 C22orf39Q6P5X5 142 aa12.07□□□□□ -0.48
HDAC4-216ENST00000544989 Q6ZVU0 165 aa12.07□□□□□ -0.48
HDAC4-216ENST00000544989 ZCCHC9Q8N567 271 aaKnown RBP12.07□□□□□ -0.48
HDAC4-216ENST00000544989 RTL3Q8N8U3 475 aaKnown RBP12.07□□□□□ -0.48
HDAC4-216ENST00000544989 OR14C36Q8NHC7 312 aa12.07□□□□□ -0.48
HDAC4-216ENST00000544989 FAM131CQ96AQ9 280 aa12.07□□□□□ -0.48
HDAC4-216ENST00000544989 ACE2Q9BYF1 805 aaPredicted RBP12.07□□□□□ -0.48
HDAC4-216ENST00000544989 XPO4Q9C0E2 1151 aaKnown RBP12.07□□□□□ -0.48
HDAC4-216ENST00000544989 NEUROG2Q9H2A3 272 aa12.07□□□□□ -0.48
HDAC4-216ENST00000544989 SLC32A1Q9H598 525 aa12.07□□□□□ -0.48
HDAC4-216ENST00000544989 DYRK4Q9NR20 520 aa12.07□□□□□ -0.48
HDAC4-216ENST00000544989 DNAAF2Q9NVR5 837 aaKnown RBP12.07□□□□□ -0.48
HDAC4-216ENST00000544989 ZNHIT6Q9NWK9 470 aaKnown RBP12.07□□□□□ -0.48
HDAC4-216ENST00000544989 EIF2B4Q9UI10 523 aaKnown RBP12.07□□□□□ -0.48
HDAC4-216ENST00000544989 SETXQ7Z333 2677 aaKnown RBP12.06□□□□□ -0.48
HDAC4-216ENST00000544989 CREB3O43889 395 aa12.06□□□□□ -0.48
HDAC4-216ENST00000544989 GYPCP04921 128 aa12.06□□□□□ -0.48
HDAC4-216ENST00000544989 ADRB1P08588 477 aa12.06□□□□□ -0.48
HDAC4-216ENST00000544989 ZNF883P0CG24 379 aa12.06□□□□□ -0.48
HDAC4-216ENST00000544989 CEACAM1P13688 526 aa12.06□□□□□ -0.48
HDAC4-216ENST00000544989 HNRNPH3P31942 346 aaKnown RBP12.06□□□□□ -0.48
HDAC4-216ENST00000544989 CHRNA3P32297 505 aa12.06□□□□□ -0.48
HDAC4-216ENST00000544989 PCK1P35558 622 aa12.06□□□□□ -0.48
HDAC4-216ENST00000544989 MAPK8P45983 427 aa12.06□□□□□ -0.48
HDAC4-216ENST00000544989 GRIA4P48058 902 aa12.06□□□□□ -0.48
HDAC4-216ENST00000544989 GALCP54803 685 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms