RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 TAB2Q9NYJ8 693 aa13.44□□□□□ -0.26
RTN3-213ENST00000543552 SARDHQ9UL12 918 aa13.44□□□□□ -0.26
RTN3-213ENST00000543552 PCDHGA1Q9Y5H4 931 aa13.44□□□□□ -0.26
RTN3-213ENST00000543552 TP53BP1Q12888 1972 aaPredicted RBP13.43□□□□□ -0.26
RTN3-213ENST00000543552 LDOC1O95751 146 aaPredicted RBP13.43□□□□□ -0.26
RTN3-213ENST00000543552 WNT1P04628 370 aa13.43□□□□□ -0.26
RTN3-213ENST00000543552 MMEP08473 750 aa13.43□□□□□ -0.26
RTN3-213ENST00000543552 C1SP09871 688 aa13.43□□□□□ -0.26
RTN3-213ENST00000543552 TFE3P19532 575 aaPredicted RBP13.43□□□□□ -0.26
RTN3-213ENST00000543552 EPHA8P29322 1005 aaPredicted RBP13.43□□□□□ -0.26
RTN3-213ENST00000543552 MAT2AP31153 395 aaKnown RBP13.43□□□□□ -0.26
RTN3-213ENST00000543552 CHRNA3P32297 505 aa13.43□□□□□ -0.26
RTN3-213ENST00000543552 HNF1BP35680 557 aa13.43□□□□□ -0.26
RTN3-213ENST00000543552 FLT3P36888 993 aa13.43□□□□□ -0.26
RTN3-213ENST00000543552 CDR2Q01850 454 aa13.43□□□□□ -0.26
RTN3-213ENST00000543552 SLC20A2Q08357 652 aa13.43□□□□□ -0.26
RTN3-213ENST00000543552 POM121L1PQ3SYA9 428 aa13.43□□□□□ -0.26
RTN3-213ENST00000543552 CCDC157Q569K6 752 aa13.43□□□□□ -0.26
RTN3-213ENST00000543552 CLEC17AQ6ZS10 378 aa13.43□□□□□ -0.26
RTN3-213ENST00000543552 ZNF683Q8IZ20 524 aa13.43□□□□□ -0.26
RTN3-213ENST00000543552 TMIEQ8NEW7 156 aa13.43□□□□□ -0.26
RTN3-213ENST00000543552 SAP25Q8TEE9 199 aa13.43□□□□□ -0.26
RTN3-213ENST00000543552 CPA5Q8WXQ8 436 aa13.43□□□□□ -0.26
RTN3-213ENST00000543552 CEP44Q9C0F1 390 aa13.43□□□□□ -0.26
RTN3-213ENST00000543552 TMEM59LQ9UK28 342 aa13.43□□□□□ -0.26
RTN3-213ENST00000543552 CXorf51AA0A1B0GTR3 108 aa13.42□□□□□ -0.26
RTN3-213ENST00000543552 CBX4O00257 560 aa13.42□□□□□ -0.26
RTN3-213ENST00000543552 ENC1O14682 589 aa13.42□□□□□ -0.26
RTN3-213ENST00000543552 SNAP91O60641 907 aa13.42□□□□□ -0.26
RTN3-213ENST00000543552 SRGAP2O75044 1071 aa13.42□□□□□ -0.26
RTN3-213ENST00000543552 GFPT2O94808 682 aa13.42□□□□□ -0.26
RTN3-213ENST00000543552 MMP8P22894 467 aa13.42□□□□□ -0.26
RTN3-213ENST00000543552 RRM1P23921 792 aa13.42□□□□□ -0.26
RTN3-213ENST00000543552 SDC4P31431 198 aa13.42□□□□□ -0.26
RTN3-213ENST00000543552 SOX5P35711 763 aa13.42□□□□□ -0.26
RTN3-213ENST00000543552 RXRGP48443 463 aa13.42□□□□□ -0.26
RTN3-213ENST00000543552 METAP1P53582 386 aa13.42□□□□□ -0.26
RTN3-213ENST00000543552 GEMIN4P57678 1058 aaKnown RBP13.42□□□□□ -0.26
RTN3-213ENST00000543552 POLR2FP61218 127 aaKnown RBP13.42□□□□□ -0.26
RTN3-213ENST00000543552 SYCP1Q15431 976 aa13.42□□□□□ -0.26
RTN3-213ENST00000543552 SMAD1Q15797 465 aaKnown RBP13.42□□□□□ -0.26
RTN3-213ENST00000543552 CDKAL1Q5VV42 579 aa13.42□□□□□ -0.26
RTN3-213ENST00000543552 C22orf39Q6P5X5 142 aa13.42□□□□□ -0.26
RTN3-213ENST00000543552 ZSCAN30Q86W11 494 aa13.42□□□□□ -0.26
RTN3-213ENST00000543552 FAM131BQ86XD5 332 aa13.42□□□□□ -0.26
RTN3-213ENST00000543552 GATAD2AQ86YP4 633 aa13.42□□□□□ -0.26
RTN3-213ENST00000543552 PCDH20Q8N6Y1 951 aaKnown RBP13.42□□□□□ -0.26
RTN3-213ENST00000543552 OR2A12Q8NGT7 310 aa13.42□□□□□ -0.26
RTN3-213ENST00000543552 CNDP2Q96KP4 475 aaKnown RBP13.42□□□□□ -0.26
RTN3-213ENST00000543552 CFAP57Q96MR6 1250 aa13.42□□□□□ -0.26
RTN3-213ENST00000543552 GBP4Q96PP9 640 aa13.42□□□□□ -0.26
RTN3-213ENST00000543552 PSMB7Q99436 277 aa13.42□□□□□ -0.26
RTN3-213ENST00000543552 SPON2Q9BUD6 331 aa13.42□□□□□ -0.26
RTN3-213ENST00000543552 VPS16Q9H269 839 aa13.42□□□□□ -0.26
RTN3-213ENST00000543552 GANQ9H2C0 597 aa13.42□□□□□ -0.26
RTN3-213ENST00000543552 ATP13A1Q9HD20 1204 aa13.42□□□□□ -0.26
RTN3-213ENST00000543552 ANLNQ9NQW6 1124 aa13.42□□□□□ -0.26
RTN3-213ENST00000543552 METTL5Q9NRN9 209 aaKnown RBP13.42□□□□□ -0.26
RTN3-213ENST00000543552 FAM207AQ9NSI2 230 aaPredicted RBP13.42□□□□□ -0.26
RTN3-213ENST00000543552 MPP6Q9NZW5 540 aa13.42□□□□□ -0.26
RTN3-213ENST00000543552 ARHGAP20Q9P2F6 1191 aa13.42□□□□□ -0.26
RTN3-213ENST00000543552 PPARGC1AQ9UBK2 798 aaKnown RBP13.42□□□□□ -0.26
RTN3-213ENST00000543552 IL36AQ9UHA7 158 aa13.42□□□□□ -0.26
RTN3-213ENST00000543552 NOCTQ9UK39 431 aaKnown RBP13.42□□□□□ -0.26
RTN3-213ENST00000543552 ZFYVE26Q68DK2 2539 aa13.41□□□□□ -0.26
RTN3-213ENST00000543552 A0A0D9SEW6 157 aa13.41□□□□□ -0.26
RTN3-213ENST00000543552 GOLGA6L22H0YM25 854 aa13.41□□□□□ -0.26
RTN3-213ENST00000543552 I6L893 689 aaPredicted RBP13.41□□□□□ -0.26
RTN3-213ENST00000543552 PLK4O00444 970 aa13.41□□□□□ -0.26
RTN3-213ENST00000543552 RFPL3O75679 317 aa13.41□□□□□ -0.26
RTN3-213ENST00000543552 MT-CO1P00395 513 aa13.41□□□□□ -0.26
RTN3-213ENST00000543552 AKT2P31751 481 aa13.41□□□□□ -0.26
RTN3-213ENST00000543552 STAT1P42224 750 aa13.41□□□□□ -0.26
RTN3-213ENST00000543552 NSFP46459 744 aaKnown RBP13.41□□□□□ -0.26
RTN3-213ENST00000543552 SERPINH1P50454 418 aaKnown RBP13.41□□□□□ -0.26
RTN3-213ENST00000543552 ATP11AP98196 1134 aa13.41□□□□□ -0.26
RTN3-213ENST00000543552 ILKQ13418 452 aa13.41□□□□□ -0.26
RTN3-213ENST00000543552 KRT31Q15323 416 aa13.41□□□□□ -0.26
RTN3-213ENST00000543552 HS1BP3Q53T59 392 aa13.41□□□□□ -0.26
RTN3-213ENST00000543552 PIP5KL1Q5T9C9 394 aa13.41□□□□□ -0.26
RTN3-213ENST00000543552 LINGO4Q6UY18 593 aa13.41□□□□□ -0.26
RTN3-213ENST00000543552 BNIPLQ7Z465 357 aa13.41□□□□□ -0.26
RTN3-213ENST00000543552 TMPRSS12Q86WS5 348 aa13.41□□□□□ -0.26
RTN3-213ENST00000543552 FAM174AQ8TBP5 190 aa13.41□□□□□ -0.26
RTN3-213ENST00000543552 KLHDC7BQ96G42 594 aa13.41□□□□□ -0.26
RTN3-213ENST00000543552 PCMTD1Q96MG8 357 aaPredicted RBP13.41□□□□□ -0.26
RTN3-213ENST00000543552 HDAC8Q9BY41 377 aa13.41□□□□□ -0.26
RTN3-213ENST00000543552 DKK4Q9UBT3 224 aa13.41□□□□□ -0.26
RTN3-213ENST00000543552 HPCAL4Q9UM19 191 aa13.41□□□□□ -0.26
RTN3-213ENST00000543552 SNX10Q9Y5X0 201 aa13.41□□□□□ -0.26
RTN3-213ENST00000543552 PTPRBP23467 1997 aa13.41□□□□□ -0.26
RTN3-213ENST00000543552 ITPR1Q14643 2758 aa13.41□□□□□ -0.26
RTN3-213ENST00000543552 A0A1W2PQU0 124 aa13.4□□□□□ -0.26
RTN3-213ENST00000543552 ANKRD62A6NC57 917 aa13.4□□□□□ -0.26
RTN3-213ENST00000543552 K7ERQ8 282 aa13.4□□□□□ -0.26
RTN3-213ENST00000543552 WNT9AO14904 365 aa13.4□□□□□ -0.26
RTN3-213ENST00000543552 ENDOD1O94919 500 aa13.4□□□□□ -0.26
RTN3-213ENST00000543552 CAPNS1P04632 268 aa13.4□□□□□ -0.26
RTN3-213ENST00000543552 CYP1A1P04798 512 aaPredicted RBP13.4□□□□□ -0.26
RTN3-213ENST00000543552 CTSLP07711 333 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms