RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 EDN1P05305 212 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 MMP10P09238 476 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 GNAO1P09471 354 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 STX5Q13190 355 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 SURF1Q15526 300 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 CCDC80Q76M96 950 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 SLC15A3Q8IY34 581 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 TMEM176AQ96HP8 235 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 AGAP2Q99490 1192 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 NAT9Q9BTE0 207 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 RNF146Q9NTX7 359 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 ZDHHC2Q9UIJ5 367 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 CNOT6Q9ULM6 557 aaKnown RBP13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 HES2Q9Y543 173 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 FADS3Q9Y5Q0 445 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 ACOT8O14734 319 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 MT-CO1P00395 513 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 FUCA1P04066 466 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 PRKCGP05129 697 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 PSMB4P28070 264 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 EEF1DP29692 281 aaKnown RBP13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 PTGER2P43116 358 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 RHDQ02161 417 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 SEMA5AQ13591 1074 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 TBCELQ5QJ74 424 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 PID1Q7Z2X4 250 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 SAPCD2Q86UD0 394 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 CDAN1Q8IWY9 1227 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 OFCC1Q8IZS5 231 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 INO80B-WBP1J3KQ70 363 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 CLOCKO15516 846 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 IL4RP24394 825 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 SOX11P35716 441 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 ARL4AP40617 200 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 MAGEA3P43357 314 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 MAGEA6P43360 314 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 PGGT1BP53609 377 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 DHRS4L2Q6PKH6 230 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 ILDR2Q71H61 639 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 DHFR2Q86XF0 187 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 CNTD1Q8N815 330 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 MTG1Q9BT17 334 aaPredicted RBP13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 BFARQ9NZS9 450 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 MORF4L1Q9UBU8 362 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 DAPK2Q9UIK4 370 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 ITGB1BP2Q9UKP3 347 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 AFG3L2Q9Y4W6 797 aa13.05□□□□□ -0.32
SFSWAP-209ENST00000540469 A0A0A0MRY4 1105 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 TMEM233B4DJY2 109 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 RNF103O00237 685 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 TADA2AO75478 443 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 JUNP05412 331 aaKnown RBP13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 NAB1Q13506 487 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 OLIG2Q13516 323 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 USP10Q14694 798 aaKnown RBP13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 PITRM1Q5JRX3 1037 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 CHSY3Q70JA7 882 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 ZBTB8OSQ8IWT0 167 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 TMEM130Q8N3G9 435 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 GPRASP2Q96D09 838 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 SPATA13Q96N96 652 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 PPP1R10Q96QC0 940 aaKnown RBP13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 RBBP8Q99708 897 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 ELOVL4Q9GZR5 314 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 GGA3Q9NZ52 723 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 KLHL8Q9P2G9 620 aaPredicted RBP13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 VPS28Q9UK41 221 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 G3V2L1 256 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 H3BMQ9 156 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 SOCS2O14508 198 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 SRP72O76094 671 aaKnown RBP13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 ENDOD1O94919 500 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 ATG7O95352 703 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 BCL10O95999 233 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 ITGB3P05106 788 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 ZNF182P17025 639 aaPredicted RBP13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 HDCP19113 662 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 CAPSQ13938 189 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 SPIDRQ14159 915 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 LDLRAP1Q5SW96 308 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 LIPMQ5VYY2 423 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 TRNP1Q6NT89 227 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 GALNT18Q6P9A2 607 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 TTC30AQ86WT1 665 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 SCUBE3Q8IX30 993 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 TMCO5AQ8N6Q1 288 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 OR52K1Q8NGK4 314 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 COG8Q96MW5 612 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 TCF12Q99081 682 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 ZNF670Q9BS34 389 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 TMEM39BQ9GZU3 492 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 PDLIM7Q9NR12 457 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 VTI1BQ9UEU0 232 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 SCAF8Q9UPN6 1271 aaKnown RBP13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 RUVBL2Q9Y230 463 aaKnown RBP13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 ADAM23O75077 832 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 NPM3O75607 178 aaKnown RBP13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 MPOP05164 745 aa13.04□□□□□ -0.32
SFSWAP-209ENST00000540469 PRKCBP05771 671 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms