RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 STN1Q9H668 368 aaKnown RBP9.64□□□□□ -0.87
CTNNA1-243ENST00000540387 HMG20AQ9NP66 347 aa9.64□□□□□ -0.87
CTNNA1-243ENST00000540387 SNTG2Q9NY99 539 aa9.64□□□□□ -0.87
CTNNA1-243ENST00000540387 PRPF19Q9UMS4 504 aaKnown RBP9.64□□□□□ -0.87
CTNNA1-243ENST00000540387 KIAA1024Q9UPX6 916 aa9.64□□□□□ -0.87
CTNNA1-243ENST00000540387 SHOC2Q9UQ13 582 aa9.64□□□□□ -0.87
CTNNA1-243ENST00000540387 TRIM64A6NGJ6 449 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 DDX39AO00148 427 aaKnown RBP9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 CA12O43570 354 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 ASNA1O43681 348 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 KRT3P12035 628 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 NCF2P19878 526 aaPredicted RBP9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 MATN1P21941 496 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 SLC26A2P50443 739 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 MTM1Q13496 603 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 STXBP2Q15833 593 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 FNBP1LQ5T0N5 605 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 XRRA1Q6P2D8 792 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 OTOP1Q7RTM1 612 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 ASCC1Q8N9N2 400 aaKnown RBP9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 FBXO36Q8NEA4 188 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 TNIP2Q8NFZ5 429 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 EPS8L1Q8TE68 723 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 PGBD4Q96DM1 585 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 CDRT15Q96T59 188 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 BCAS3Q9H6U6 928 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 AGO4Q9HCK5 861 aaKnown RBP9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 ANAPC7Q9UJX3 599 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 VAV3Q9UKW4 847 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 DSEQ9UL01 958 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 DNPEPQ9ULA0 475 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 GOLGA8IPA6NC78 632 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 SNTNA6NMZ2 147 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 ACOX3O15254 700 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 DHX15O43143 795 aaKnown RBP9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 AKAP10O43572 662 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 CHMP2AO43633 222 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 CSPG5O95196 566 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 SGPL1O95470 568 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 GNAO1P09471 354 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 KRT5P13647 590 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 POLR2CP19387 275 aaPredicted RBP9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 EDNRBP24530 442 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 MAPK4P31152 587 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 VEGFBP49765 207 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 RAD23AP54725 363 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 MRPS5P82675 430 aaKnown RBP9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 PRKCQQ04759 706 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 CLCQ05315 142 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 NIPAL4Q0D2K0 466 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 C19orf57Q0VDD7 668 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 TUBA3CQ13748 450 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 PIGGQ5H8A4 983 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 FSCBQ5H9T9 825 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 NHSL2Q5HYW2 709 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 KCTD8Q6ZWB6 473 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 UTS2BQ765I0 119 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 NIPA1Q7RTP0 329 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 PLEKHH3Q7Z736 793 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 PALM2Q8IXS6 379 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 BEND7Q8N7W2 519 aaPredicted RBP9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 ZSWIM2Q8NEG5 633 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 PIWIL2Q8TC59 973 aaKnown RBP9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 DPF3Q92784 378 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 CDHR1Q96JP9 859 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 CIB1Q99828 191 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 WDR12Q9GZL7 423 aaKnown RBP9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 POLE4Q9NR33 117 aa9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 DUS2Q9NX74 493 aaKnown RBP9.63□□□□□ -0.87
CTNNA1-243ENST00000540387 B8ZZF3 427 aa9.62□□□□□ -0.87
CTNNA1-243ENST00000540387 AIM2O14862 343 aa9.62□□□□□ -0.87
CTNNA1-243ENST00000540387 DCXO43602 365 aa9.62□□□□□ -0.87
CTNNA1-243ENST00000540387 LIASO43766 372 aa9.62□□□□□ -0.87
CTNNA1-243ENST00000540387 GAS7O60861 476 aa9.62□□□□□ -0.87
CTNNA1-243ENST00000540387 LYPLA1O75608 230 aaPredicted RBP9.62□□□□□ -0.87
CTNNA1-243ENST00000540387 INHBAP08476 426 aa9.62□□□□□ -0.87
CTNNA1-243ENST00000540387 TRIM49P0CI25 452 aa9.62□□□□□ -0.87
CTNNA1-243ENST00000540387 TRIM49CP0CI26 452 aa9.62□□□□□ -0.87
CTNNA1-243ENST00000540387 EEF1DP29692 281 aaKnown RBP9.62□□□□□ -0.87
CTNNA1-243ENST00000540387 SERPINB1P30740 379 aa9.62□□□□□ -0.87
CTNNA1-243ENST00000540387 NAMPTP43490 491 aa9.62□□□□□ -0.87
CTNNA1-243ENST00000540387 IDH3AP50213 366 aa9.62□□□□□ -0.87
CTNNA1-243ENST00000540387 NUDT2P50583 147 aa9.62□□□□□ -0.87
CTNNA1-243ENST00000540387 TMBIM6P55061 237 aa9.62□□□□□ -0.87
CTNNA1-243ENST00000540387 PKNOX1P55347 436 aa9.62□□□□□ -0.87
CTNNA1-243ENST00000540387 GALK2Q01415 458 aa9.62□□□□□ -0.87
CTNNA1-243ENST00000540387 KCNA1Q09470 495 aa9.62□□□□□ -0.87
CTNNA1-243ENST00000540387 NEDD8Q15843 81 aa9.62□□□□□ -0.87
CTNNA1-243ENST00000540387 ZFYVE27Q5T4F4 411 aa9.62□□□□□ -0.87
CTNNA1-243ENST00000540387 IQSEC1Q6DN90 963 aa9.62□□□□□ -0.87
CTNNA1-243ENST00000540387 TUBA3EQ6PEY2 450 aa9.62□□□□□ -0.87
CTNNA1-243ENST00000540387 BNC2Q6ZN30 1099 aaPredicted RBP9.62□□□□□ -0.87
CTNNA1-243ENST00000540387 OTOP3Q7RTS5 596 aa9.62□□□□□ -0.87
CTNNA1-243ENST00000540387 MAVSQ7Z434 540 aa9.62□□□□□ -0.87
CTNNA1-243ENST00000540387 HAUS6Q7Z4H7 955 aa9.62□□□□□ -0.87
CTNNA1-243ENST00000540387 DPP9Q86TI2 863 aa9.62□□□□□ -0.87
CTNNA1-243ENST00000540387 SLC22A16Q86VW1 577 aa9.62□□□□□ -0.87
CTNNA1-243ENST00000540387 RHPN2Q8IUC4 686 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms