RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 FAXCQ5TGI0 409 aa9.43□□□□□ -0.9
USP28-205ENST00000537706 LVRNQ6Q4G3 990 aa9.43□□□□□ -0.9
USP28-205ENST00000537706 CBWD2Q8IUF1 395 aa9.43□□□□□ -0.9
USP28-205ENST00000537706 TP53INP2Q8IXH6 220 aa9.43□□□□□ -0.9
USP28-205ENST00000537706 CYFIP2Q96F07 1278 aa9.43□□□□□ -0.9
USP28-205ENST00000537706 CCDC114Q96M63 670 aa9.43□□□□□ -0.9
USP28-205ENST00000537706 VRTNQ9H8Y1 702 aa9.43□□□□□ -0.9
USP28-205ENST00000537706 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.43□□□□□ -0.9
USP28-205ENST00000537706 TBC1D7Q9P0N9 293 aa9.43□□□□□ -0.9
USP28-205ENST00000537706 SLCO3A1Q9UIG8 710 aa9.43□□□□□ -0.9
USP28-205ENST00000537706 CTSOP43234 321 aaPredicted RBP9.43□□□□□ -0.9
USP28-205ENST00000537706 NDST1P52848 882 aa9.43□□□□□ -0.9
USP28-205ENST00000537706 THOP1P52888 689 aa9.43□□□□□ -0.9
USP28-205ENST00000537706 ELOCQ15369 112 aa9.43□□□□□ -0.9
USP28-205ENST00000537706 ARL6IP4Q66PJ3 421 aaKnown RBP9.43□□□□□ -0.9
USP28-205ENST00000537706 PHACTR4Q8IZ21 702 aa9.43□□□□□ -0.9
USP28-205ENST00000537706 FAM184AQ8NB25 1140 aa9.43□□□□□ -0.9
USP28-205ENST00000537706 SNX21Q969T3 373 aa9.43□□□□□ -0.9
USP28-205ENST00000537706 CCDC127Q96BQ5 260 aa9.43□□□□□ -0.9
USP28-205ENST00000537706 PPP1R9BQ96SB3 815 aa9.43□□□□□ -0.9
USP28-205ENST00000537706 GPR27Q9NS67 375 aa9.43□□□□□ -0.9
USP28-205ENST00000537706 SIRPGQ9P1W8 387 aa9.43□□□□□ -0.9
USP28-205ENST00000537706 MAP10Q9P2G4 905 aa9.43□□□□□ -0.9
USP28-205ENST00000537706 SLC25A13Q9UJS0 675 aa9.43□□□□□ -0.9
USP28-205ENST00000537706 PPM1HQ9ULR3 514 aa9.43□□□□□ -0.9
USP28-205ENST00000537706 MAP4K5Q9Y4K4 846 aa9.43□□□□□ -0.9
USP28-205ENST00000537706 PCDHB3Q9Y5E6 796 aa9.43□□□□□ -0.9
USP28-205ENST00000537706 A0A1W2PQM1 296 aa9.42□□□□□ -0.9
USP28-205ENST00000537706 EIF3DO15371 548 aaKnown RBP eCLIP9.42□□□□□ -0.9
USP28-205ENST00000537706 RFPL1O75677 317 aa9.42□□□□□ -0.9
USP28-205ENST00000537706 MAP4P27816 1152 aaKnown RBP9.42□□□□□ -0.9
USP28-205ENST00000537706 MAN1A1P33908 653 aa9.42□□□□□ -0.9
USP28-205ENST00000537706 UGT1A3P35503 534 aa9.42□□□□□ -0.9
USP28-205ENST00000537706 BLKP51451 505 aa9.42□□□□□ -0.9
USP28-205ENST00000537706 SGSHP51688 502 aa9.42□□□□□ -0.9
USP28-205ENST00000537706 AP3M2P53677 418 aa9.42□□□□□ -0.9
USP28-205ENST00000537706 CENPCQ03188 943 aa9.42□□□□□ -0.9
USP28-205ENST00000537706 SGCGQ13326 291 aa9.42□□□□□ -0.9
USP28-205ENST00000537706 C1orf61Q13536 156 aa9.42□□□□□ -0.9
USP28-205ENST00000537706 SLC12A1Q13621 1099 aa9.42□□□□□ -0.9
USP28-205ENST00000537706 PSMD6Q15008 389 aa9.42□□□□□ -0.9
USP28-205ENST00000537706 ME3Q16798 604 aa9.42□□□□□ -0.9
USP28-205ENST00000537706 MAP9Q49MG5 647 aa9.42□□□□□ -0.9
USP28-205ENST00000537706 KIAA1161Q6NSJ0 714 aa9.42□□□□□ -0.9
USP28-205ENST00000537706 C16orf46Q6P387 395 aa9.42□□□□□ -0.9
USP28-205ENST00000537706 RFWD3Q6PCD5 774 aa9.42□□□□□ -0.9
USP28-205ENST00000537706 TMPRSS9Q7Z410 1059 aa9.42□□□□□ -0.9
USP28-205ENST00000537706 HSCBQ8IWL3 235 aa9.42□□□□□ -0.9
USP28-205ENST00000537706 MCEMP1Q8IX19 187 aa9.42□□□□□ -0.9
USP28-205ENST00000537706 Q8N9G6 341 aaPredicted RBP9.42□□□□□ -0.9
USP28-205ENST00000537706 FBXO18Q8NFZ0 1043 aa9.42□□□□□ -0.9
USP28-205ENST00000537706 FEM1CQ96JP0 617 aa9.42□□□□□ -0.9
USP28-205ENST00000537706 LMLNQ96KR4 655 aa9.42□□□□□ -0.9
USP28-205ENST00000537706 RPL10LQ96L21 214 aaKnown RBP9.42□□□□□ -0.9
USP28-205ENST00000537706 BMFQ96LC9 184 aa9.42□□□□□ -0.9
USP28-205ENST00000537706 ASPSCR1Q9BZE9 553 aa9.42□□□□□ -0.9
USP28-205ENST00000537706 XYLT2Q9H1B5 865 aa9.42□□□□□ -0.9
USP28-205ENST00000537706 BLOC1S4Q9NUP1 217 aa9.42□□□□□ -0.9
USP28-205ENST00000537706 INTS6Q9UL03 887 aaKnown RBP9.42□□□□□ -0.9
USP28-205ENST00000537706 PCDHGA3Q9Y5H0 932 aa9.42□□□□□ -0.9
USP28-205ENST00000537706 COL27A1Q8IZC6 1860 aaPredicted RBP9.42□□□□□ -0.9
USP28-205ENST00000537706 HGSO14964 777 aaPredicted RBP9.41□□□□□ -0.9
USP28-205ENST00000537706 YY2O15391 372 aa9.41□□□□□ -0.9
USP28-205ENST00000537706 DUX1O43812 170 aa9.41□□□□□ -0.9
USP28-205ENST00000537706 ACSL4O60488 711 aa9.41□□□□□ -0.9
USP28-205ENST00000537706 C4BPAP04003 597 aaKnown RBP9.41□□□□□ -0.9
USP28-205ENST00000537706 CTSEP14091 401 aa9.41□□□□□ -0.9
USP28-205ENST00000537706 NR1D1P20393 614 aa9.41□□□□□ -0.9
USP28-205ENST00000537706 TOB1P50616 345 aaPredicted RBP9.41□□□□□ -0.9
USP28-205ENST00000537706 METAP1P53582 386 aa9.41□□□□□ -0.9
USP28-205ENST00000537706 RPS21P63220 83 aaKnown RBP9.41□□□□□ -0.9
USP28-205ENST00000537706 NUCB2P80303 420 aa9.41□□□□□ -0.9
USP28-205ENST00000537706 CRTC2Q53ET0 693 aaPredicted RBP9.41□□□□□ -0.9
USP28-205ENST00000537706 GKN2Q86XP6 184 aa9.41□□□□□ -0.9
USP28-205ENST00000537706 C12orf29Q8N999 325 aa9.41□□□□□ -0.9
USP28-205ENST00000537706 KYQ8NBH2 561 aa9.41□□□□□ -0.9
USP28-205ENST00000537706 ERCC4Q92889 916 aaPredicted RBP9.41□□□□□ -0.9
USP28-205ENST00000537706 PPP1R16AQ96I34 528 aa9.41□□□□□ -0.9
USP28-205ENST00000537706 DUSP16Q9BY84 665 aa9.41□□□□□ -0.9
USP28-205ENST00000537706 SLC17A9Q9BYT1 436 aa9.41□□□□□ -0.9
USP28-205ENST00000537706 ERRFI1Q9UJM3 462 aaPredicted RBP9.41□□□□□ -0.9
USP28-205ENST00000537706 GPR34Q9UPC5 381 aa9.41□□□□□ -0.9
USP28-205ENST00000537706 RNF215Q9Y6U7 377 aa9.41□□□□□ -0.9
USP28-205ENST00000537706 KPNA3O00505 521 aaPredicted RBP9.41□□□□□ -0.9
USP28-205ENST00000537706 MCF2LO15068 1137 aa9.41□□□□□ -0.9
USP28-205ENST00000537706 INPP4BO15327 924 aa9.41□□□□□ -0.9
USP28-205ENST00000537706 DIAPH2O60879 1101 aa9.41□□□□□ -0.9
USP28-205ENST00000537706 LRCH4O75427 683 aa9.41□□□□□ -0.9
USP28-205ENST00000537706 LUC7L3O95232 432 aaKnown RBP9.41□□□□□ -0.9
USP28-205ENST00000537706 PER3P56645 1201 aa9.41□□□□□ -0.9
USP28-205ENST00000537706 ARHGEF7Q14155 803 aa9.41□□□□□ -0.9
USP28-205ENST00000537706 ELOAQ14241 798 aaKnown RBP9.41□□□□□ -0.9
USP28-205ENST00000537706 SNRNP35Q16560 246 aaKnown RBP9.41□□□□□ -0.9
USP28-205ENST00000537706 RILPL1Q5EBL4 403 aa9.41□□□□□ -0.9
USP28-205ENST00000537706 KDELC2Q7Z4H8 507 aa9.41□□□□□ -0.9
USP28-205ENST00000537706 RBFAQ8N0V3 343 aa9.41□□□□□ -0.9
USP28-205ENST00000537706 DDA1Q9BW61 102 aa9.41□□□□□ -0.9
USP28-205ENST00000537706 NT5C1AQ9BXI3 368 aa9.41□□□□□ -0.9
USP28-205ENST00000537706 TRIT1Q9H3H1 467 aaKnown RBP9.41□□□□□ -0.9
USP28-205ENST00000537706 CAAP1Q9H8G2 361 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms