RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	SALL4	Q9UJQ4	1053 aa		12.77	□□□□□ -0.37
CAPN1-223	ENST00000533079	CA5B	Q9Y2D0	317 aa		12.77	□□□□□ -0.37
CAPN1-223	ENST00000533079	FARP1	Q9Y4F1	1045 aa	Predicted RBP	12.77	□□□□□ -0.37
CAPN1-223	ENST00000533079	ARID1B	Q8NFD5	2236 aa	Predicted RBP	12.77	□□□□□ -0.37
CAPN1-223	ENST00000533079	BSN	Q9UPA5	3926 aa		12.77	□□□□□ -0.37
CAPN1-223	ENST00000533079	CCDC187	A0A096LP49	1063 aa		12.76	□□□□□ -0.37
CAPN1-223	ENST00000533079		A0A1W2PNU3	283 aa	Predicted RBP	12.76	□□□□□ -0.37
CAPN1-223	ENST00000533079	EME2	A4GXA9	379 aa	Predicted RBP	12.76	□□□□□ -0.37
CAPN1-223	ENST00000533079		M0QYV0	167 aa		12.76	□□□□□ -0.37
CAPN1-223	ENST00000533079	TPP1	O14773	563 aa		12.76	□□□□□ -0.37
CAPN1-223	ENST00000533079	SLC31A1	O15431	190 aa		12.76	□□□□□ -0.37
CAPN1-223	ENST00000533079	CSF2	P04141	144 aa		12.76	□□□□□ -0.37
CAPN1-223	ENST00000533079	FYN	P06241	537 aa		12.76	□□□□□ -0.37
CAPN1-223	ENST00000533079	NME1	P15531	152 aa	Known RBP	12.76	□□□□□ -0.37
CAPN1-223	ENST00000533079	PDGFRA	P16234	1089 aa		12.76	□□□□□ -0.37
CAPN1-223	ENST00000533079	PRLR	P16471	622 aa		12.76	□□□□□ -0.37
CAPN1-223	ENST00000533079	RGS7	P49802	495 aa		12.76	□□□□□ -0.37
CAPN1-223	ENST00000533079	EIF3I	Q13347	325 aa	Known RBP	12.76	□□□□□ -0.37
CAPN1-223	ENST00000533079	CNGA2	Q16280	664 aa		12.76	□□□□□ -0.37
CAPN1-223	ENST00000533079	ACCSL	Q4AC99	568 aa		12.76	□□□□□ -0.37
CAPN1-223	ENST00000533079	C6orf132	Q5T0Z8	1188 aa		12.76	□□□□□ -0.37
CAPN1-223	ENST00000533079	CXorf57	Q6NSI4	855 aa	Known RBP	12.76	□□□□□ -0.37
CAPN1-223	ENST00000533079		Q6ZVU0	165 aa		12.76	□□□□□ -0.37
CAPN1-223	ENST00000533079	TAC4	Q86UU9	113 aa		12.76	□□□□□ -0.37
CAPN1-223	ENST00000533079	SH2D3C	Q8N5H7	860 aa		12.76	□□□□□ -0.37
CAPN1-223	ENST00000533079	ATP6V0D2	Q8N8Y2	350 aa		12.76	□□□□□ -0.37
CAPN1-223	ENST00000533079	CLEC4C	Q8WTT0	213 aa		12.76	□□□□□ -0.37
CAPN1-223	ENST00000533079	NAT6	Q93015	286 aa		12.76	□□□□□ -0.37
CAPN1-223	ENST00000533079	PPP1R16A	Q96I34	528 aa		12.76	□□□□□ -0.37
CAPN1-223	ENST00000533079	MYOC	Q99972	504 aa		12.76	□□□□□ -0.37
CAPN1-223	ENST00000533079	DYRK4	Q9NR20	520 aa		12.76	□□□□□ -0.37
CAPN1-223	ENST00000533079	SLC12A6	Q9UHW9	1150 aa		12.76	□□□□□ -0.37
CAPN1-223	ENST00000533079	ACSL6	Q9UKU0	697 aa		12.76	□□□□□ -0.37
CAPN1-223	ENST00000533079	PCDHGA7	Q9Y5G6	932 aa		12.76	□□□□□ -0.37
CAPN1-223	ENST00000533079	COL12A1	Q99715	3063 aa		12.75	□□□□□ -0.37
CAPN1-223	ENST00000533079	SPTY2D1-AS1	A0A0U1RR47	76 aa		12.75	□□□□□ -0.37
CAPN1-223	ENST00000533079	FAM237A	A0A1B0GTK4	181 aa		12.75	□□□□□ -0.37
CAPN1-223	ENST00000533079	SLC16A3	O15427	465 aa	Known RBP	12.75	□□□□□ -0.37
CAPN1-223	ENST00000533079	GABBR2	O75899	941 aa		12.75	□□□□□ -0.37
CAPN1-223	ENST00000533079	IGLV3-25	P01717	112 aa		12.75	□□□□□ -0.37
CAPN1-223	ENST00000533079	SLC2A3	P11169	496 aa		12.75	□□□□□ -0.37
CAPN1-223	ENST00000533079	CMA1	P23946	247 aa		12.75	□□□□□ -0.37
CAPN1-223	ENST00000533079	RABIF	P47224	123 aa		12.75	□□□□□ -0.37
CAPN1-223	ENST00000533079	RPL34	P49207	117 aa	Known RBP	12.75	□□□□□ -0.37
CAPN1-223	ENST00000533079	RPIA	P49247	311 aa		12.75	□□□□□ -0.37
CAPN1-223	ENST00000533079	NR0B2	Q15466	257 aa		12.75	□□□□□ -0.37
CAPN1-223	ENST00000533079	DLG2	Q15700	870 aa		12.75	□□□□□ -0.37
CAPN1-223	ENST00000533079	CBWD6	Q4V339	395 aa		12.75	□□□□□ -0.37
CAPN1-223	ENST00000533079	TMEM259	Q4ZIN3	620 aa		12.75	□□□□□ -0.37
CAPN1-223	ENST00000533079	CBWD3	Q5JTY5	395 aa		12.75	□□□□□ -0.37
CAPN1-223	ENST00000533079	CBWD5	Q5RIA9	395 aa		12.75	□□□□□ -0.37
CAPN1-223	ENST00000533079	KIAA1161	Q6NSJ0	714 aa		12.75	□□□□□ -0.37
CAPN1-223	ENST00000533079	GUSBP11	Q6P575	273 aa		12.75	□□□□□ -0.37
CAPN1-223	ENST00000533079	RBM43	Q6ZSC3	357 aa	Known RBP	12.75	□□□□□ -0.37
CAPN1-223	ENST00000533079	EFL1	Q7Z2Z2	1120 aa	Known RBP	12.75	□□□□□ -0.37
CAPN1-223	ENST00000533079	PTAR1	Q7Z6K3	402 aa	Predicted RBP	12.75	□□□□□ -0.37
CAPN1-223	ENST00000533079	GLMN	Q92990	594 aa		12.75	□□□□□ -0.37
CAPN1-223	ENST00000533079	FAM149B1	Q96BN6	582 aa		12.75	□□□□□ -0.37
CAPN1-223	ENST00000533079	LIN37	Q96GY3	246 aa	Predicted RBP	12.75	□□□□□ -0.37
CAPN1-223	ENST00000533079	PRMT1	Q99873	361 aa	Known RBP	12.75	□□□□□ -0.37
CAPN1-223	ENST00000533079	SEMA3C	Q99985	751 aa		12.75	□□□□□ -0.37
CAPN1-223	ENST00000533079	ARHGAP9	Q9BRR9	750 aa		12.75	□□□□□ -0.37
CAPN1-223	ENST00000533079	OSBPL2	Q9H1P3	480 aa		12.75	□□□□□ -0.37
CAPN1-223	ENST00000533079	FZD3	Q9NPG1	666 aa		12.75	□□□□□ -0.37
CAPN1-223	ENST00000533079	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	12.75	□□□□□ -0.37
CAPN1-223	ENST00000533079	XPO7	Q9UIA9	1087 aa	Known RBP	12.75	□□□□□ -0.37
CAPN1-223	ENST00000533079	HS3ST2	Q9Y278	367 aa		12.75	□□□□□ -0.37
CAPN1-223	ENST00000533079	HS3ST3A1	Q9Y663	406 aa		12.75	□□□□□ -0.37
CAPN1-223	ENST00000533079	KCNU1	A8MYU2	1149 aa		12.74	□□□□□ -0.37
CAPN1-223	ENST00000533079	PIK3R2	O00459	728 aa		12.74	□□□□□ -0.37
CAPN1-223	ENST00000533079	CETN3	O15182	167 aa		12.74	□□□□□ -0.37
CAPN1-223	ENST00000533079	AQP9	O43315	295 aa		12.74	□□□□□ -0.37
CAPN1-223	ENST00000533079	TNFSF15	O95150	251 aa		12.74	□□□□□ -0.37
CAPN1-223	ENST00000533079	GJB6	O95452	261 aa		12.74	□□□□□ -0.37
CAPN1-223	ENST00000533079	PRNP	P04156	253 aa		12.74	□□□□□ -0.37
CAPN1-223	ENST00000533079	PRR29	P0C7W0	189 aa		12.74	□□□□□ -0.37
CAPN1-223	ENST00000533079	ACADSB	P45954	432 aa		12.74	□□□□□ -0.37
CAPN1-223	ENST00000533079	MEA1	Q16626	185 aa		12.74	□□□□□ -0.37
CAPN1-223	ENST00000533079	CDKN3	Q16667	212 aa		12.74	□□□□□ -0.37
CAPN1-223	ENST00000533079	DCAF17	Q5H9S7	520 aa	Predicted RBP	12.74	□□□□□ -0.37
CAPN1-223	ENST00000533079	TCERG1L	Q5VWI1	586 aa		12.74	□□□□□ -0.37
CAPN1-223	ENST00000533079	TMEM270	Q6UE05	265 aa		12.74	□□□□□ -0.37
CAPN1-223	ENST00000533079		Q6ZSR6	202 aa		12.74	□□□□□ -0.37
CAPN1-223	ENST00000533079	GAS2L3	Q86XJ1	694 aa		12.74	□□□□□ -0.37
CAPN1-223	ENST00000533079	EXD3	Q8N9H8	876 aa		12.74	□□□□□ -0.37
CAPN1-223	ENST00000533079	TMIE	Q8NEW7	156 aa		12.74	□□□□□ -0.37
CAPN1-223	ENST00000533079	BTN2A2	Q8WVV5	523 aa		12.74	□□□□□ -0.37
CAPN1-223	ENST00000533079	SGF29	Q96ES7	293 aa		12.74	□□□□□ -0.37
CAPN1-223	ENST00000533079	TBATA	Q96M53	351 aa		12.74	□□□□□ -0.37
CAPN1-223	ENST00000533079	HDAC8	Q9BY41	377 aa		12.74	□□□□□ -0.37
CAPN1-223	ENST00000533079	TRIM4	Q9C037	500 aa		12.74	□□□□□ -0.37
CAPN1-223	ENST00000533079	MIS12	Q9H081	205 aa		12.74	□□□□□ -0.37
CAPN1-223	ENST00000533079	POPDC2	Q9HBU9	364 aa		12.74	□□□□□ -0.37
CAPN1-223	ENST00000533079	VPS28	Q9UK41	221 aa		12.74	□□□□□ -0.37
CAPN1-223	ENST00000533079	NAALADL1	Q9UQQ1	740 aa		12.74	□□□□□ -0.37
CAPN1-223	ENST00000533079	SPTA1	P02549	2419 aa		12.74	□□□□□ -0.37
CAPN1-223	ENST00000533079	CPED1	A4D0V7	1026 aa		12.73	□□□□□ -0.37
CAPN1-223	ENST00000533079	KPNA3	O00505	521 aa	Predicted RBP	12.73	□□□□□ -0.37
CAPN1-223	ENST00000533079	SUV39H1	O43463	412 aa		12.73	□□□□□ -0.37
CAPN1-223	ENST00000533079	NEBL	O76041	1014 aa		12.73	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms