RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 CYP51A1Q16850 503 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 SLC25A52Q3SY17 297 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 ACBD5Q5T8D3 534 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 WSCD1Q658N2 575 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 PYROXD2Q8N2H3 581 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 B3GALNT2Q8NCR0 500 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 TWNKQ96RR1 684 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 SPAG4Q9NPE6 437 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 ABI2Q9NYB9 513 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 SLC17A6Q9P2U8 582 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 DNAJB4Q9UDY4 337 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 NR2E3Q9Y5X4 410 aa8.54□□□□□ -1.04
LIMCH1-216ENST00000512820 PEX10O60683 326 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 DEAF1O75398 565 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 SLC2A3P11169 496 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 ADCYAP1R1P41586 468 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 PCYT1AP49585 367 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 VGLL4Q14135 290 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 SQLEQ14534 574 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 ZRANB3Q5FWF4 1079 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 OTUD3Q5T2D3 398 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 GJC2Q5T442 439 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 DPY19L2P1Q6NXN4 242 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 MIER2Q8N344 545 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 CCDC185Q8N715 623 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 FAM81AQ8TBF8 368 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 LENG1Q96BZ8 264 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 RPRD1AQ96P16 312 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 PPP1R10Q96QC0 940 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 PANX3Q96QZ0 392 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 ENTPD7Q9NQZ7 604 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 RGS18Q9NS28 235 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 SLC30A1Q9Y6M5 507 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 SIPA1L3O60292 1781 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 C17orf102A2RUQ5 167 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 CLASP2O75122 1294 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 CCDC166P0CW27 439 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 NELFEP18615 380 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 GRM5P41594 1212 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 TUBP50607 506 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 MRPS5P82675 430 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 CNPY1Q3B7I2 92 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 SGO1Q5FBB7 561 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 MARC1Q5VT66 337 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 CGB2Q6NT52 195 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 UNC5BQ8IZJ1 945 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 TERB1Q8NA31 727 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 BTBD9Q96Q07 612 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 RBBP8Q99708 897 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 MRPL57Q9BQC6 102 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 C9orf16Q9BUW7 83 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 GATA5Q9BWX5 397 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 RUBCNLQ9H714 662 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 ATXN10Q9UBB4 475 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 TRMT6Q9UJA5 497 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 ZNF214Q9UL59 606 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 GNEQ9Y223 722 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 PCDHB12Q9Y5F1 795 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 STYXL1Q9Y6J8 313 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 AK5Q9Y6K8 562 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 CASTOR2A6NHX0 329 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 CLDN5O00501 218 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 LINGO3P0C6S8 592 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 LIMK2P53671 638 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 ATXN1P54253 815 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 NEDD8Q15843 81 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 TRIM16LQ309B1 348 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 ARL13AQ5H913 290 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 ILDR2Q71H61 639 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 SLC26A9Q7LBE3 791 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 CAMK1DQ8IU85 385 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 LZTR1Q8N653 840 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 LRRC52Q8N7C0 313 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 SLC16A10Q8TF71 515 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 NDRG1Q92597 394 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 RHOJQ9H4E5 214 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 ALG9Q9H6U8 611 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 SYTL2Q9HCH5 934 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 MYO1GB0I1T2 1018 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 MAP3K13O43283 966 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 DAB1O75553 588 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 LDLRP01130 860 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 LTA4HP09960 611 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 TFEBP19484 476 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 PRDX6P30041 224 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 PTPN9P43378 593 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 TMED10P49755 219 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 SP2Q02086 613 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 MBTD1Q05BQ5 628 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 FSTL4Q6MZW2 842 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 MIB1Q86YT6 1006 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 TMEM192Q8IY95 271 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 DHRSXQ8N5I4 330 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 SNX19Q92543 992 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 MFSD3Q96ES6 412 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 MIPEPQ99797 713 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 PTPRHQ9HD43 1115 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 ARHGEF4Q9NR80 690 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 CHRAC1Q9NRG0 131 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms