RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 TECPR2O15040 1411 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 ACOX3O15254 700 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 TFE3P19532 575 aaPredicted RBP12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 ELK4P28324 431 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 RBL1P28749 1068 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 RRM2P31350 389 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 GMPRP36959 345 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 CLCNKBP51801 687 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 DSTNP60981 165 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 ORC2Q13416 577 aaPredicted RBP12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 DSC3Q14574 896 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 TAF12Q16514 161 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 AASDHQ4L235 1098 aaPredicted RBP12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 TMEM198Q66K66 360 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 FAM71AQ8IYT1 594 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 PGAM4Q8N0Y7 254 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 SCML4Q8N228 414 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 JMJD4Q9H9V9 463 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 GPRC5CQ9NQ84 441 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 PKD2L1Q9P0L9 805 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 PCDHGC3Q9UN70 934 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 EVPLLA8MZ36 301 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 FAM155AB1AL88 458 aaPredicted RBP12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 PLA2G16P53816 162 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 CCNA1P78396 465 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 GALNT1Q10472 559 aaPredicted RBP12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 PON2Q15165 354 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 ATAD3CQ5T2N8 411 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 HID1Q8IV36 788 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 THNSL1Q8IYQ7 743 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 KATNAL2Q8IYT4 538 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 MCOLN2Q8IZK6 566 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 ZNF781Q8N8C0 355 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 ELMO1Q92556 727 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 SLCO4A1Q96BD0 722 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 MOCOSQ96EN8 888 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 FUNDC2Q9BWH2 189 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 MTMR12Q9C0I1 747 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 GPN2Q9H9Y4 310 aaPredicted RBP12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 EFCAB1Q9HAE3 211 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 ATP13A2Q9NQ11 1180 aa12.24□□□□□ -0.45
LIMCH1-213ENST00000511496 NFASCO94856 1347 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 TISP43B9A030 160 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 SNX2O60749 519 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 HSPA4LO95757 839 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 SERPINE1P05121 402 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 PIGFQ07326 219 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 POU6F1Q14863 301 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 LAYNQ6UX15 382 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 MAMDC4Q6UXC1 1216 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 CAMK1DQ8IU85 385 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 TPH2Q8IWU9 490 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 FAM109AQ8N4B1 249 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 SGCDQ92629 289 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 SORT1Q99523 831 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 AGPAT3Q9NRZ7 376 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 PCDH10Q9P2E7 1040 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 RGPD2P0DJD1 1756 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 TLR3O15455 904 aaKnown RBP12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 PSTPIP1O43586 416 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 SERPINB2P05120 415 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 FAM86B2P0C5J1 330 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 LTKP29376 864 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 PSMC5P62195 406 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 RHDQ02161 417 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 LRRC8EQ6NSJ5 796 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 LINC00469Q8N7U9 141 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 CANT1Q8WVQ1 401 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 CNDP1Q96KN2 507 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 RMDN3Q96TC7 470 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 IL37Q9NZH6 218 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 JAG2Q9Y219 1238 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 EIF3LQ9Y262 564 aaKnown RBP12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 WTIPA6NIX2 430 aaPredicted RBP12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 TRIM38O00635 465 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 CRHR1P34998 444 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 TAGLNQ01995 201 aaKnown RBP12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 C19orf57Q0VDD7 668 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 FAM122CQ6P4D5 195 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 PAGE2Q7Z2X7 111 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 CELF2-AS1Q8N7Q2 184 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 KCNH5Q8NCM2 988 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 ACO2Q99798 780 aaKnown RBP12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 SUCOQ9UBS9 1254 aaKnown RBP12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 IPO11Q9UI26 975 aaKnown RBP12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 AGTPBP1Q9UPW5 1226 aa12.23□□□□□ -0.45
LIMCH1-213ENST00000511496 MROH5Q6ZUA9 1318 aa12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 ZNF195O14628 629 aa12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 GCP02774 474 aa12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 MBL2P11226 248 aaPredicted RBP12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 RFX1P22670 979 aa12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 CD40LGP29965 261 aa12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 NSFP46459 744 aaKnown RBP12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 ZNF132P52740 706 aa12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 SNTA1Q13424 505 aa12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 EML3Q32P44 896 aa12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 CATSPEREQ5SY80 951 aa12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 WDR78Q5VTH9 848 aa12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 DHRSXQ8N5I4 330 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms