RNA–Protein interactions for RNA: ENST00000509162.1

TOPBP1-207, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 2

Gene TOPBP1, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-207ENST00000509162 USP36Q9P275 1121 aaKnown RBP7.4□□□□□ -1.22
TOPBP1-207ENST00000509162 MYO1AQ9UBC5 1043 aa7.4□□□□□ -1.22
TOPBP1-207ENST00000509162 SLCO3A1Q9UIG8 710 aa7.4□□□□□ -1.22
TOPBP1-207ENST00000509162 ABCA7Q8IZY2 2146 aa7.4□□□□□ -1.23
TOPBP1-207ENST00000509162 PLXNA2O75051 1894 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 ATXN2Q99700 1313 aaKnown RBP7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 SSU72P8A0A1W2PR75 194 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 PLK4O00444 970 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 SPINT1O43278 529 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 SMAD6O43541 496 aaKnown RBP7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 SIN3BO75182 1162 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 CTSLP07711 333 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 DLDP09622 509 aaKnown RBP7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 SRCP12931 536 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 PSMA2P25787 234 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 GDF10P55107 478 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 CDH4P55283 916 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 AMPD2Q01433 879 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 DPYSQ14117 519 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 CCDC6Q16204 474 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 SMTNL2Q2TAL5 461 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 PLK5Q496M5 336 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 HSF5Q4G112 596 aaPredicted RBP7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 KCNT1Q5JUK3 1230 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 EOGTQ5NDL2 527 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 C9orf64Q5T6V5 341 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 LCE2CQ5TA81 110 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 TTC39BQ5VTQ0 682 aaPredicted RBP7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 AFMIDQ63HM1 303 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 PMS2CLQ68D20 193 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 TCEAL6Q6IPX3 200 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 LINGO4Q6UY18 593 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 ARHGAP36Q6ZRI8 547 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 SLC41A1Q8IVJ1 513 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 DRC7Q8IY82 874 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 NIPA2Q8N8Q9 360 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 OR8K1Q8NGG5 319 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 GAB3Q8WWW8 586 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 PTPRN2Q92932 1015 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 TCEAL3Q969E4 200 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 RNF34Q969K3 372 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 FAM122AQ96E09 287 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 RPL10LQ96L21 214 aaKnown RBP7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 C1orf74Q96LT6 269 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 HAPLN3Q96S86 360 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 ORAI3Q9BRQ5 295 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 FEM1AQ9BSK4 669 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 NUP85Q9BW27 656 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 TRIM5Q9C035 493 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 OSBPL2Q9H1P3 480 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 WDCPQ9H6R7 721 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 NHEJ1Q9H9Q4 299 aaPredicted RBP7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 RXFP3Q9NSD7 469 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 TMEM248Q9NWD8 314 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 PPARGC1AQ9UBK2 798 aaKnown RBP7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 PCSK1NQ9UHG2 260 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 SARDHQ9UL12 918 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 SLC8A2Q9UPR5 921 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 ERVW-1Q9UQF0 538 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 SDK1Q7Z5N4 2213 aa7.39□□□□□ -1.23
TOPBP1-207ENST00000509162 CACNA1AO00555 2505 aa7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 CCDC163A0A0D9SF12 145 aa7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 AKR1B15C9JRZ8 316 aaPredicted RBP7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 H3BM21 787 aa7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 LILRA1O75019 489 aa7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 CLDN11O75508 207 aa7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 GJB3O75712 270 aa7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 RPP40O75818 363 aaKnown RBP7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 MTA2O94776 668 aa7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 EPN2O95208 641 aa7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 LCA5LO95447 670 aa7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 F9P00740 461 aa7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 IGLV3-19P01714 112 aa7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 RHOCP08134 193 aa7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 SLC2A3P11169 496 aa7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 GOT1P17174 413 aa7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 GBP1P32455 592 aa7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 PTGER3P43115 390 aa7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 MARCKSL1P49006 195 aa7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 DGKEP52429 567 aa7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 RPS14P62263 151 aaKnown RBP7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 HNRNPA1L2Q32P51 320 aaKnown RBP7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 ATP13A4Q4VNC1 1196 aa7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 FNDC3BQ53EP0 1204 aaKnown RBP7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 RABGAP1LQ5R372 815 aa7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 CCDC122Q5T0U0 273 aa7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 RNF219Q5W0B1 726 aaPredicted RBP7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 SERPINA13PQ6UXR4 307 aa7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 LEKR1Q6ZMV7 388 aa7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 Q6ZVU0 165 aa7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 CAMKK1Q8N5S9 505 aa7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 AADATQ8N5Z0 425 aa7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 MEIOBQ8N635 442 aa7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 RTL3Q8N8U3 475 aaKnown RBP7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 DCAF4L2Q8NA75 395 aa7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 CHST14Q8NCH0 376 aa7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 ACRBPQ8NEB7 543 aa7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 ZNF564Q8TBZ8 553 aaPredicted RBP7.38□□□□□ -1.23
TOPBP1-207ENST00000509162 FAM71BQ8TC56 605 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms