RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 SRCP12931 536 aa16.74■□□□□ 0.27
SF3A1-209ENST00000496189 GNSP15586 552 aa16.74■□□□□ 0.27
SF3A1-209ENST00000496189 ARL4AP40617 200 aa16.74■□□□□ 0.27
SF3A1-209ENST00000496189 PSMD8P48556 350 aa16.74■□□□□ 0.27
SF3A1-209ENST00000496189 YBEYP58557 167 aaPredicted RBP16.74■□□□□ 0.27
SF3A1-209ENST00000496189 NLRP14Q86W24 1093 aa16.74■□□□□ 0.27
SF3A1-209ENST00000496189 MMAAQ8IVH4 418 aaKnown RBP16.74■□□□□ 0.27
SF3A1-209ENST00000496189 STK40Q8N2I9 435 aa16.74■□□□□ 0.27
SF3A1-209ENST00000496189 CADM4Q8NFZ8 388 aa16.74■□□□□ 0.27
SF3A1-209ENST00000496189 CEP76Q8TAP6 659 aa16.74■□□□□ 0.27
SF3A1-209ENST00000496189 PTPRN2Q92932 1015 aa16.74■□□□□ 0.27
SF3A1-209ENST00000496189 PSMB7Q99436 277 aa16.74■□□□□ 0.27
SF3A1-209ENST00000496189 TRIM7Q9C029 511 aa16.74■□□□□ 0.27
SF3A1-209ENST00000496189 PABPC3Q9H361 631 aaKnown RBP16.74■□□□□ 0.27
SF3A1-209ENST00000496189 MTG2Q9H4K7 406 aa16.74■□□□□ 0.27
SF3A1-209ENST00000496189 DYRK4Q9NR20 520 aa16.74■□□□□ 0.27
SF3A1-209ENST00000496189 PCDHA13Q9Y5I0 950 aa16.74■□□□□ 0.27
SF3A1-209ENST00000496189 FAM186AA6NE01 2351 aa16.74■□□□□ 0.27
SF3A1-209ENST00000496189 RIF1Q5UIP0 2472 aaKnown RBP16.74■□□□□ 0.27
SF3A1-209ENST00000496189 DOCK4Q8N1I0 1966 aa16.73■□□□□ 0.27
SF3A1-209ENST00000496189 C5AR1P21730 350 aa16.73■□□□□ 0.27
SF3A1-209ENST00000496189 SLC8A1P32418 973 aa16.73■□□□□ 0.27
SF3A1-209ENST00000496189 PTGER3P43115 390 aa16.73■□□□□ 0.27
SF3A1-209ENST00000496189 ZNF252P-AS1Q0IIN9 211 aa16.73■□□□□ 0.27
SF3A1-209ENST00000496189 PARP15Q460N3 678 aa16.73■□□□□ 0.27
SF3A1-209ENST00000496189 LINGO4Q6UY18 593 aa16.73■□□□□ 0.27
SF3A1-209ENST00000496189 Q6ZVU0 165 aa16.73■□□□□ 0.27
SF3A1-209ENST00000496189 DEFB119Q8N690 84 aa16.73■□□□□ 0.27
SF3A1-209ENST00000496189 NIPA2Q8N8Q9 360 aa16.73■□□□□ 0.27
SF3A1-209ENST00000496189 CCDC112Q8NEF3 446 aa16.73■□□□□ 0.27
SF3A1-209ENST00000496189 SLC35G2Q8TBE7 412 aa16.73■□□□□ 0.27
SF3A1-209ENST00000496189 FRS2Q8WU20 508 aa16.73■□□□□ 0.27
SF3A1-209ENST00000496189 RFFLQ8WZ73 363 aa16.73■□□□□ 0.27
SF3A1-209ENST00000496189 ARHGEF2Q92974 986 aaKnown RBP16.73■□□□□ 0.27
SF3A1-209ENST00000496189 NUSAP1Q9BXS6 441 aaKnown RBP16.73■□□□□ 0.27
SF3A1-209ENST00000496189 CEP44Q9C0F1 390 aa16.73■□□□□ 0.27
SF3A1-209ENST00000496189 GPATCH2LQ9NWQ4 482 aa16.73■□□□□ 0.27
SF3A1-209ENST00000496189 FBXL12Q9NXK8 326 aa16.73■□□□□ 0.27
SF3A1-209ENST00000496189 ZNF212Q9UDV6 495 aa16.73■□□□□ 0.27
SF3A1-209ENST00000496189 CDV3Q9UKY7 258 aaKnown RBP16.73■□□□□ 0.27
SF3A1-209ENST00000496189 OTOGLQ3ZCN5 2332 aa16.72■□□□□ 0.27
SF3A1-209ENST00000496189 LRRC72A6NJI9 287 aa16.72■□□□□ 0.27
SF3A1-209ENST00000496189 WASH4PA8MWX3 477 aa16.72■□□□□ 0.27
SF3A1-209ENST00000496189 H3BRJ5 948 aa16.72■□□□□ 0.27
SF3A1-209ENST00000496189 MCF2LO15068 1137 aa16.72■□□□□ 0.27
SF3A1-209ENST00000496189 MID1O15344 667 aa16.72■□□□□ 0.27
SF3A1-209ENST00000496189 SEMA4FO95754 770 aa16.72■□□□□ 0.27
SF3A1-209ENST00000496189 PRNPP04156 253 aa16.72■□□□□ 0.27
SF3A1-209ENST00000496189 ARHGAP25P42331 645 aa16.72■□□□□ 0.27
SF3A1-209ENST00000496189 SERPINH1P50454 418 aaKnown RBP16.72■□□□□ 0.27
SF3A1-209ENST00000496189 DNA2P51530 1060 aa16.72■□□□□ 0.27
SF3A1-209ENST00000496189 CCDC6Q16204 474 aa16.72■□□□□ 0.27
SF3A1-209ENST00000496189 PLA2G2CQ5R387 149 aa16.72■□□□□ 0.27
SF3A1-209ENST00000496189 C22orf39Q6P5X5 142 aa16.72■□□□□ 0.27
SF3A1-209ENST00000496189 RFX8Q6ZV50 586 aa16.72■□□□□ 0.27
SF3A1-209ENST00000496189 PCDH20Q8N6Y1 951 aaKnown RBP16.72■□□□□ 0.27
SF3A1-209ENST00000496189 SNX19Q92543 992 aa16.72■□□□□ 0.27
SF3A1-209ENST00000496189 HSPH1Q92598 858 aa16.72■□□□□ 0.27
SF3A1-209ENST00000496189 ZNF419Q96HQ0 510 aaPredicted RBP16.72■□□□□ 0.27
SF3A1-209ENST00000496189 PPP1R16AQ96I34 528 aa16.72■□□□□ 0.27
SF3A1-209ENST00000496189 MAGEB5Q9BZ81 275 aa16.72■□□□□ 0.27
SF3A1-209ENST00000496189 PARD6AQ9NPB6 346 aa16.72■□□□□ 0.27
SF3A1-209ENST00000496189 FZD4Q9ULV1 537 aa16.72■□□□□ 0.27
SF3A1-209ENST00000496189 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.72■□□□□ 0.27
SF3A1-209ENST00000496189 RALGAPA1Q6GYQ0 2036 aa16.72■□□□□ 0.27
SF3A1-209ENST00000496189 PTPRZ1P23471 2315 aaPredicted RBP16.71■□□□□ 0.27
SF3A1-209ENST00000496189 A0A1W2PP55 124 aa16.71■□□□□ 0.27
SF3A1-209ENST00000496189 ARHGAP42A6NI28 874 aa16.71■□□□□ 0.27
SF3A1-209ENST00000496189 BUB1O43683 1085 aa16.71■□□□□ 0.27
SF3A1-209ENST00000496189 CFIP05156 583 aa16.71■□□□□ 0.27
SF3A1-209ENST00000496189 ITPKAP23677 461 aa16.71■□□□□ 0.27
SF3A1-209ENST00000496189 ACVRL1P37023 503 aa16.71■□□□□ 0.27
SF3A1-209ENST00000496189 NDST2P52849 883 aa16.71■□□□□ 0.27
SF3A1-209ENST00000496189 SEMA3BQ13214 749 aa16.71■□□□□ 0.27
SF3A1-209ENST00000496189 KRT81Q14533 505 aa16.71■□□□□ 0.27
SF3A1-209ENST00000496189 GSE1Q14687 1217 aa16.71■□□□□ 0.27
SF3A1-209ENST00000496189 TCEAL1Q15170 157 aa16.71■□□□□ 0.27
SF3A1-209ENST00000496189 DUOXA1Q1HG43 343 aa16.71■□□□□ 0.27
SF3A1-209ENST00000496189 ZFYVE27Q5T4F4 411 aa16.71■□□□□ 0.27
SF3A1-209ENST00000496189 DCAF12L1Q5VU92 463 aa16.71■□□□□ 0.27
SF3A1-209ENST00000496189 UMODL1-AS1Q8N2C9 162 aa16.71■□□□□ 0.27
SF3A1-209ENST00000496189 HDDC3Q8N4P3 179 aa16.71■□□□□ 0.27
SF3A1-209ENST00000496189 NETO1Q8TDF5 533 aa16.71■□□□□ 0.27
SF3A1-209ENST00000496189 TEKT4Q8WW24 435 aa16.71■□□□□ 0.27
SF3A1-209ENST00000496189 CASKIN2Q8WXE0 1202 aa16.71■□□□□ 0.27
SF3A1-209ENST00000496189 CALR3Q96L12 384 aaKnown RBP16.71■□□□□ 0.27
SF3A1-209ENST00000496189 PEBP4Q96S96 227 aa16.71■□□□□ 0.27
SF3A1-209ENST00000496189 FAM129BQ96TA1 746 aa16.71■□□□□ 0.27
SF3A1-209ENST00000496189 ACE2Q9BYF1 805 aaPredicted RBP16.71■□□□□ 0.27
SF3A1-209ENST00000496189 CD93Q9NPY3 652 aa16.71■□□□□ 0.27
SF3A1-209ENST00000496189 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.71■□□□□ 0.27
SF3A1-209ENST00000496189 NDFIP2Q9NV92 336 aa16.71■□□□□ 0.27
SF3A1-209ENST00000496189 TPX2Q9ULW0 747 aaKnown RBP16.71■□□□□ 0.27
SF3A1-209ENST00000496189 NEU3Q9UQ49 428 aa16.71■□□□□ 0.27
SF3A1-209ENST00000496189 ATXN2Q99700 1313 aaKnown RBP16.7■□□□□ 0.26
SF3A1-209ENST00000496189 EP300Q09472 2414 aaPredicted RBP16.7■□□□□ 0.26
SF3A1-209ENST00000496189 FAM47DPA6NHR8 397 aa16.7■□□□□ 0.26
SF3A1-209ENST00000496189 RASA4BC9J798 803 aa16.7■□□□□ 0.26
SF3A1-209ENST00000496189 RASA4O43374 803 aa16.7■□□□□ 0.26
SF3A1-209ENST00000496189 KDELR3O43731 214 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms