RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 HMBSP08397 361 aa12.67□□□□□ -0.38
HMGN1-220ENST00000492280 PBX3P40426 434 aa12.67□□□□□ -0.38
HMGN1-220ENST00000492280 MGAT3Q09327 533 aa12.67□□□□□ -0.38
HMGN1-220ENST00000492280 BTBD8Q5XKL5 378 aa12.67□□□□□ -0.38
HMGN1-220ENST00000492280 SAPCD2Q86UD0 394 aa12.67□□□□□ -0.38
HMGN1-220ENST00000492280 WDR75Q8IWA0 830 aaKnown RBP12.67□□□□□ -0.38
HMGN1-220ENST00000492280 MFSD6LQ8IWD5 586 aa12.67□□□□□ -0.38
HMGN1-220ENST00000492280 RSPH1Q8WYR4 309 aa12.67□□□□□ -0.38
HMGN1-220ENST00000492280 PANX3Q96QZ0 392 aa12.67□□□□□ -0.38
HMGN1-220ENST00000492280 NMRK1Q9NWW6 199 aa12.67□□□□□ -0.38
HMGN1-220ENST00000492280 PCDH10Q9P2E7 1040 aa12.67□□□□□ -0.38
HMGN1-220ENST00000492280 SLC7A8Q9UHI5 535 aa12.67□□□□□ -0.38
HMGN1-220ENST00000492280 FIS1Q9Y3D6 152 aa12.67□□□□□ -0.38
HMGN1-220ENST00000492280 TET1Q8NFU7 2136 aa12.67□□□□□ -0.38
HMGN1-220ENST00000492280 SPECC1L-ADORA2AF8WAN1 911 aa12.67□□□□□ -0.38
HMGN1-220ENST00000492280 IRAK2O43187 625 aa12.67□□□□□ -0.38
HMGN1-220ENST00000492280 TOMM70O94826 608 aa12.67□□□□□ -0.38
HMGN1-220ENST00000492280 JUNP05412 331 aaKnown RBP12.67□□□□□ -0.38
HMGN1-220ENST00000492280 SPRP35270 261 aaPredicted RBP12.67□□□□□ -0.38
HMGN1-220ENST00000492280 IDH3AP50213 366 aa12.67□□□□□ -0.38
HMGN1-220ENST00000492280 SERPINB8P50452 374 aa12.67□□□□□ -0.38
HMGN1-220ENST00000492280 USP46P62068 366 aa12.67□□□□□ -0.38
HMGN1-220ENST00000492280 CBLBQ13191 982 aa12.67□□□□□ -0.38
HMGN1-220ENST00000492280 KRT72Q14CN4 511 aa12.67□□□□□ -0.38
HMGN1-220ENST00000492280 WASHC2DQ5SRD0 308 aa12.67□□□□□ -0.38
HMGN1-220ENST00000492280 RIPOR1Q6ZS17 1223 aa12.67□□□□□ -0.38
HMGN1-220ENST00000492280 PDZD4Q76G19 769 aaPredicted RBP12.67□□□□□ -0.38
HMGN1-220ENST00000492280 SCD5Q86SK9 330 aa12.67□□□□□ -0.38
HMGN1-220ENST00000492280 LDB1Q86U70 411 aaPredicted RBP12.67□□□□□ -0.38
HMGN1-220ENST00000492280 ZNF354CQ86Y25 554 aa12.67□□□□□ -0.38
HMGN1-220ENST00000492280 ULK2Q8IYT8 1036 aa12.67□□□□□ -0.38
HMGN1-220ENST00000492280 CFAP61Q8NHU2 1237 aa12.67□□□□□ -0.38
HMGN1-220ENST00000492280 OR52B2Q96RD2 323 aa12.67□□□□□ -0.38
HMGN1-220ENST00000492280 SLC9A7Q96T83 725 aa12.67□□□□□ -0.38
HMGN1-220ENST00000492280 DNAJB4Q9UDY4 337 aa12.67□□□□□ -0.38
HMGN1-220ENST00000492280 TAGLN3Q9UI15 199 aa12.67□□□□□ -0.38
HMGN1-220ENST00000492280 GIT1Q9Y2X7 761 aa12.67□□□□□ -0.38
HMGN1-220ENST00000492280 MIA3Q5JRA6 1907 aa12.67□□□□□ -0.38
HMGN1-220ENST00000492280 MANSC4A6NHS7 340 aaPredicted RBP12.66□□□□□ -0.38
HMGN1-220ENST00000492280 TMEM233B4DJY2 109 aa12.66□□□□□ -0.38
HMGN1-220ENST00000492280 G3V2L1 256 aa12.66□□□□□ -0.38
HMGN1-220ENST00000492280 ZBTB14O43829 449 aa12.66□□□□□ -0.38
HMGN1-220ENST00000492280 DDHD2O94830 711 aa12.66□□□□□ -0.38
HMGN1-220ENST00000492280 PSMG1O95456 288 aa12.66□□□□□ -0.38
HMGN1-220ENST00000492280 HSPA4LO95757 839 aa12.66□□□□□ -0.38
HMGN1-220ENST00000492280 IL1BP01584 269 aa12.66□□□□□ -0.38
HMGN1-220ENST00000492280 CNTFP26441 200 aa12.66□□□□□ -0.38
HMGN1-220ENST00000492280 SERPINB6P35237 376 aa12.66□□□□□ -0.38
HMGN1-220ENST00000492280 ABCE1P61221 599 aaKnown RBP12.66□□□□□ -0.38
HMGN1-220ENST00000492280 ZNF789Q5FWF6 425 aa12.66□□□□□ -0.38
HMGN1-220ENST00000492280 CEP97Q8IW35 865 aa12.66□□□□□ -0.38
HMGN1-220ENST00000492280 NAF1Q96HR8 494 aaKnown RBP12.66□□□□□ -0.38
HMGN1-220ENST00000492280 SCYL1Q96KG9 808 aa12.66□□□□□ -0.38
HMGN1-220ENST00000492280 NDNQ99608 321 aa12.66□□□□□ -0.38
HMGN1-220ENST00000492280 TTC1Q99614 292 aa12.66□□□□□ -0.38
HMGN1-220ENST00000492280 CSNK1G1Q9HCP0 422 aa12.66□□□□□ -0.38
HMGN1-220ENST00000492280 DCDC2Q9UHG0 476 aa12.66□□□□□ -0.38
HMGN1-220ENST00000492280 C5orf42Q9H799 3197 aa12.66□□□□□ -0.38
HMGN1-220ENST00000492280 NEMP2A6NFY4 417 aa12.66□□□□□ -0.38
HMGN1-220ENST00000492280 GPR182O15218 404 aa12.66□□□□□ -0.38
HMGN1-220ENST00000492280 MX2P20592 715 aa12.66□□□□□ -0.38
HMGN1-220ENST00000492280 USP10Q14694 798 aaKnown RBP12.66□□□□□ -0.38
HMGN1-220ENST00000492280 CNGA3Q16281 694 aa12.66□□□□□ -0.38
HMGN1-220ENST00000492280 MUM1Q2TAK8 710 aa12.66□□□□□ -0.38
HMGN1-220ENST00000492280 RABGAP1LQ5R372 815 aa12.66□□□□□ -0.38
HMGN1-220ENST00000492280 GRTP1Q5TC63 336 aa12.66□□□□□ -0.38
HMGN1-220ENST00000492280 SNX30Q5VWJ9 437 aa12.66□□□□□ -0.38
HMGN1-220ENST00000492280 PDPK2PQ6A1A2 396 aa12.66□□□□□ -0.38
HMGN1-220ENST00000492280 RGMBQ6NW40 437 aa12.66□□□□□ -0.38
HMGN1-220ENST00000492280 FAM171BQ6P995 826 aa12.66□□□□□ -0.38
HMGN1-220ENST00000492280 METTL23Q86XA0 190 aa12.66□□□□□ -0.38
HMGN1-220ENST00000492280 MIB1Q86YT6 1006 aa12.66□□□□□ -0.38
HMGN1-220ENST00000492280 SPATA2LQ8IUW3 424 aaPredicted RBP12.66□□□□□ -0.38
HMGN1-220ENST00000492280 KBTBD2Q8IY47 623 aa12.66□□□□□ -0.38
HMGN1-220ENST00000492280 PPP4R1Q8TF05 950 aa12.66□□□□□ -0.38
HMGN1-220ENST00000492280 DPF3Q92784 378 aa12.66□□□□□ -0.38
HMGN1-220ENST00000492280 STMN2Q93045 179 aa12.66□□□□□ -0.38
HMGN1-220ENST00000492280 MYCBPQ99417 103 aaPredicted RBP12.66□□□□□ -0.38
HMGN1-220ENST00000492280 COG4Q9H9E3 785 aa12.66□□□□□ -0.38
HMGN1-220ENST00000492280 PLA2G4CQ9UP65 541 aa12.66□□□□□ -0.38
HMGN1-220ENST00000492280 APOBEC2Q9Y235 224 aaKnown RBP12.66□□□□□ -0.38
HMGN1-220ENST00000492280 PRRC2BQ5JSZ5 2229 aaKnown RBP12.66□□□□□ -0.38
HMGN1-220ENST00000492280 ZNF195O14628 629 aa12.65□□□□□ -0.38
HMGN1-220ENST00000492280 BUD23O43709 281 aaKnown RBP12.65□□□□□ -0.38
HMGN1-220ENST00000492280 CNTN5O94779 1100 aa12.65□□□□□ -0.38
HMGN1-220ENST00000492280 AHSGP02765 367 aa12.65□□□□□ -0.38
HMGN1-220ENST00000492280 SERPINA6P08185 405 aa12.65□□□□□ -0.38
HMGN1-220ENST00000492280 TUBP50607 506 aa12.65□□□□□ -0.38
HMGN1-220ENST00000492280 CDH17Q12864 832 aa12.65□□□□□ -0.38
HMGN1-220ENST00000492280 LRRC36Q1X8D7 754 aa12.65□□□□□ -0.38
HMGN1-220ENST00000492280 TCHHL1Q5QJ38 904 aaPredicted RBP12.65□□□□□ -0.38
HMGN1-220ENST00000492280 PPM1LQ5SGD2 360 aa12.65□□□□□ -0.38
HMGN1-220ENST00000492280 TMEM198Q66K66 360 aa12.65□□□□□ -0.38
HMGN1-220ENST00000492280 ITPRIPL1Q6GPH6 555 aa12.65□□□□□ -0.38
HMGN1-220ENST00000492280 PM20D1Q6GTS8 502 aa12.65□□□□□ -0.38
HMGN1-220ENST00000492280 RNF135Q8IUD6 432 aa12.65□□□□□ -0.38
HMGN1-220ENST00000492280 SCUBE1Q8IWY4 988 aa12.65□□□□□ -0.38
HMGN1-220ENST00000492280 FAM136AQ96C01 138 aa12.65□□□□□ -0.38
HMGN1-220ENST00000492280 PGAP3Q96FM1 320 aaPredicted RBP12.65□□□□□ -0.38
HMGN1-220ENST00000492280 PKMYT1Q99640 499 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms