RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 AHCTF1Q8WYP5 2266 aa16.6■□□□□ 0.25
USP48-210ENST00000489108 A0A1B0GVL5 298 aa16.6■□□□□ 0.25
USP48-210ENST00000489108 EME2A4GXA9 379 aaPredicted RBP16.6■□□□□ 0.25
USP48-210ENST00000489108 POM121BA6NF01 834 aa16.6■□□□□ 0.25
USP48-210ENST00000489108 RNF103O00237 685 aa16.6■□□□□ 0.25
USP48-210ENST00000489108 KPNA3O00505 521 aaPredicted RBP16.6■□□□□ 0.25
USP48-210ENST00000489108 MYL1P05976 194 aa16.6■□□□□ 0.25
USP48-210ENST00000489108 PAEPP09466 180 aa16.6■□□□□ 0.25
USP48-210ENST00000489108 EPB41P11171 864 aaKnown RBP16.6■□□□□ 0.25
USP48-210ENST00000489108 BRD2P25440 801 aaKnown RBP16.6■□□□□ 0.25
USP48-210ENST00000489108 DRAP1Q14919 205 aaPredicted RBP16.6■□□□□ 0.25
USP48-210ENST00000489108 DEFB133Q30KQ1 61 aa16.6■□□□□ 0.25
USP48-210ENST00000489108 PERM1Q5SV97 790 aa16.6■□□□□ 0.25
USP48-210ENST00000489108 TCERG1LQ5VWI1 586 aa16.6■□□□□ 0.25
USP48-210ENST00000489108 SEL1L3Q68CR1 1132 aa16.6■□□□□ 0.25
USP48-210ENST00000489108 PTAR1Q7Z6K3 402 aaPredicted RBP16.6■□□□□ 0.25
USP48-210ENST00000489108 DCP2Q8IU60 420 aaKnown RBP16.6■□□□□ 0.25
USP48-210ENST00000489108 SH2D3CQ8N5H7 860 aa16.6■□□□□ 0.25
USP48-210ENST00000489108 TPCN2Q8NHX9 752 aa16.6■□□□□ 0.25
USP48-210ENST00000489108 CCDC47Q96A33 483 aaKnown RBP16.6■□□□□ 0.25
USP48-210ENST00000489108 KLF15Q9UIH9 416 aa16.6■□□□□ 0.25
USP48-210ENST00000489108 ATXN7L1Q9ULK2 861 aaPredicted RBP16.6■□□□□ 0.25
USP48-210ENST00000489108 PCDHB4Q9Y5E5 795 aa16.6■□□□□ 0.25
USP48-210ENST00000489108 HS3ST3A1Q9Y663 406 aa16.6■□□□□ 0.25
USP48-210ENST00000489108 CSNK1G3Q9Y6M4 447 aa16.6■□□□□ 0.25
USP48-210ENST00000489108 A6NNZ2 444 aa16.59■□□□□ 0.25
USP48-210ENST00000489108 KCNU1A8MYU2 1149 aa16.59■□□□□ 0.25
USP48-210ENST00000489108 SUV39H1O43463 412 aa16.59■□□□□ 0.25
USP48-210ENST00000489108 CSF2P04141 144 aa16.59■□□□□ 0.25
USP48-210ENST00000489108 PFKFB1P16118 471 aa16.59■□□□□ 0.25
USP48-210ENST00000489108 ITGB6P18564 788 aa16.59■□□□□ 0.25
USP48-210ENST00000489108 CHRNA3P32297 505 aa16.59■□□□□ 0.25
USP48-210ENST00000489108 OXCT1P55809 520 aa16.59■□□□□ 0.25
USP48-210ENST00000489108 PITX1P78337 314 aaPredicted RBP16.59■□□□□ 0.25
USP48-210ENST00000489108 DCAF17Q5H9S7 520 aaPredicted RBP16.59■□□□□ 0.25
USP48-210ENST00000489108 XKR5Q6UX68 686 aa16.59■□□□□ 0.25
USP48-210ENST00000489108 USP53Q70EK8 1073 aa16.59■□□□□ 0.25
USP48-210ENST00000489108 ATP6V0D2Q8N8Y2 350 aa16.59■□□□□ 0.25
USP48-210ENST00000489108 EXTL1Q92935 676 aa16.59■□□□□ 0.25
USP48-210ENST00000489108 PPP1R9BQ96SB3 815 aa16.59■□□□□ 0.25
USP48-210ENST00000489108 ARHGAP9Q9BRR9 750 aa16.59■□□□□ 0.25
USP48-210ENST00000489108 ST7Q9NRC1 585 aa16.59■□□□□ 0.25
USP48-210ENST00000489108 GPR27Q9NS67 375 aa16.59■□□□□ 0.25
USP48-210ENST00000489108 USP25Q9UHP3 1055 aa16.59■□□□□ 0.25
USP48-210ENST00000489108 SALL4Q9UJQ4 1053 aa16.59■□□□□ 0.25
USP48-210ENST00000489108 RCOR1Q9UKL0 485 aa16.59■□□□□ 0.25
USP48-210ENST00000489108 SPTY2D1-AS1A0A0U1RR47 76 aa16.58■□□□□ 0.24
USP48-210ENST00000489108 TCAF2A6NFQ2 919 aa16.58■□□□□ 0.24
USP48-210ENST00000489108 MUSKO15146 869 aa16.58■□□□□ 0.24
USP48-210ENST00000489108 CETN3O15182 167 aa16.58■□□□□ 0.24
USP48-210ENST00000489108 AQP9O43315 295 aa16.58■□□□□ 0.24
USP48-210ENST00000489108 TCEA3O75764 348 aa16.58■□□□□ 0.24
USP48-210ENST00000489108 GJB6O95452 261 aa16.58■□□□□ 0.24
USP48-210ENST00000489108 TRUB2O95900 331 aaKnown RBP16.58■□□□□ 0.24
USP48-210ENST00000489108 PAK4O96013 591 aaPredicted RBP16.58■□□□□ 0.24
USP48-210ENST00000489108 MT-CO1P00395 513 aa16.58■□□□□ 0.24
USP48-210ENST00000489108 NME1P15531 152 aaKnown RBP16.58■□□□□ 0.24
USP48-210ENST00000489108 TBXAS1P24557 533 aaPredicted RBP16.58■□□□□ 0.24
USP48-210ENST00000489108 MLLT3P42568 568 aaPredicted RBP16.58■□□□□ 0.24
USP48-210ENST00000489108 CENPCQ03188 943 aa16.58■□□□□ 0.24
USP48-210ENST00000489108 CCDC15Q0P6D6 951 aa16.58■□□□□ 0.24
USP48-210ENST00000489108 SRSF6Q13247 344 aaKnown RBP16.58■□□□□ 0.24
USP48-210ENST00000489108 MAPK8IP2Q13387 824 aaPredicted RBP16.58■□□□□ 0.24
USP48-210ENST00000489108 FGL2Q14314 439 aa16.58■□□□□ 0.24
USP48-210ENST00000489108 NR0B2Q15466 257 aa16.58■□□□□ 0.24
USP48-210ENST00000489108 TGIF1Q15583 401 aa16.58■□□□□ 0.24
USP48-210ENST00000489108 EDRF1Q3B7T1 1238 aa16.58■□□□□ 0.24
USP48-210ENST00000489108 TMEM259Q4ZIN3 620 aa16.58■□□□□ 0.24
USP48-210ENST00000489108 FBXL22Q6P050 247 aa16.58■□□□□ 0.24
USP48-210ENST00000489108 ZNF574Q6ZN55 896 aaPredicted RBP16.58■□□□□ 0.24
USP48-210ENST00000489108 TMIEQ8NEW7 156 aa16.58■□□□□ 0.24
USP48-210ENST00000489108 FAM174AQ8TBP5 190 aa16.58■□□□□ 0.24
USP48-210ENST00000489108 LMX1AQ8TE12 382 aa16.58■□□□□ 0.24
USP48-210ENST00000489108 RNF34Q969K3 372 aa16.58■□□□□ 0.24
USP48-210ENST00000489108 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.58■□□□□ 0.24
USP48-210ENST00000489108 NCKIPSDQ9NZQ3 722 aa16.58■□□□□ 0.24
USP48-210ENST00000489108 SLC12A6Q9UHW9 1150 aa16.58■□□□□ 0.24
USP48-210ENST00000489108 VPS28Q9UK41 221 aa16.58■□□□□ 0.24
USP48-210ENST00000489108 FARP1Q9Y4F1 1045 aaPredicted RBP16.58■□□□□ 0.24
USP48-210ENST00000489108 OR51B4Q9Y5P0 310 aa16.58■□□□□ 0.24
USP48-210ENST00000489108 CCDC187A0A096LP49 1063 aa16.57■□□□□ 0.24
USP48-210ENST00000489108 H3BM21 787 aa16.57■□□□□ 0.24
USP48-210ENST00000489108 RAD51BO15315 384 aa16.57■□□□□ 0.24
USP48-210ENST00000489108 NOBOXO60393 691 aa16.57■□□□□ 0.24
USP48-210ENST00000489108 IGLV3-25P01717 112 aa16.57■□□□□ 0.24
USP48-210ENST00000489108 ITGA2BP08514 1039 aa16.57■□□□□ 0.24
USP48-210ENST00000489108 SRCP12931 536 aa16.57■□□□□ 0.24
USP48-210ENST00000489108 JUNDP17535 347 aa16.57■□□□□ 0.24
USP48-210ENST00000489108 SLC5A2P31639 672 aa16.57■□□□□ 0.24
USP48-210ENST00000489108 RPL34P49207 117 aaKnown RBP16.57■□□□□ 0.24
USP48-210ENST00000489108 IRAK1P51617 712 aa16.57■□□□□ 0.24
USP48-210ENST00000489108 PDX1P52945 283 aa16.57■□□□□ 0.24
USP48-210ENST00000489108 DPYDQ12882 1025 aa16.57■□□□□ 0.24
USP48-210ENST00000489108 EIF4EBP2Q13542 120 aaPredicted RBP16.57■□□□□ 0.24
USP48-210ENST00000489108 STILQ15468 1287 aa16.57■□□□□ 0.24
USP48-210ENST00000489108 RABGAP1LQ5R372 815 aa16.57■□□□□ 0.24
USP48-210ENST00000489108 TTC39BQ5VTQ0 682 aaPredicted RBP16.57■□□□□ 0.24
USP48-210ENST00000489108 ERN2Q76MJ5 926 aaKnown RBP16.57■□□□□ 0.24
USP48-210ENST00000489108 BEND5Q7L4P6 421 aa16.57■□□□□ 0.24
USP48-210ENST00000489108 OR2A12Q8NGT7 310 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms