RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-231	ENST00000488905	TAS2R38	P59533	333 aa		18.88	■□□□□ 0.61
HDAC6-231	ENST00000488905	ALF	Q53S48	1182 aa		18.88	■□□□□ 0.61
HDAC6-231	ENST00000488905	FBXL19	Q6PCT2	694 aa		18.88	■□□□□ 0.61
HDAC6-231	ENST00000488905	ZNF683	Q8IZ20	524 aa		18.88	■□□□□ 0.61
HDAC6-231	ENST00000488905	WDCP	Q9H6R7	721 aa		18.88	■□□□□ 0.61
HDAC6-231	ENST00000488905	FASTKD2	Q9NYY8	710 aa	Known RBP eCLIP	18.88	■□□□□ 0.61
HDAC6-231	ENST00000488905	CA5B	Q9Y2D0	317 aa		18.88	■□□□□ 0.61
HDAC6-231	ENST00000488905	GCN1	Q92616	2671 aa	Known RBP	18.87	■□□□□ 0.61
HDAC6-231	ENST00000488905	KALRN	O60229	2985 aa		18.87	■□□□□ 0.61
HDAC6-231	ENST00000488905	FOXN3	O00409	490 aa	Predicted RBP	18.87	■□□□□ 0.61
HDAC6-231	ENST00000488905	KPNA3	O00505	521 aa	Predicted RBP	18.87	■□□□□ 0.61
HDAC6-231	ENST00000488905	RNGTT	O60942	597 aa	Known RBP	18.87	■□□□□ 0.61
HDAC6-231	ENST00000488905	SDC3	O75056	442 aa		18.87	■□□□□ 0.61
HDAC6-231	ENST00000488905	CKMT2	P17540	419 aa		18.87	■□□□□ 0.61
HDAC6-231	ENST00000488905	RRM1	P23921	792 aa		18.87	■□□□□ 0.61
HDAC6-231	ENST00000488905	ILK	Q13418	452 aa		18.87	■□□□□ 0.61
HDAC6-231	ENST00000488905	MAN2A1	Q16706	1144 aa		18.87	■□□□□ 0.61
HDAC6-231	ENST00000488905	SETD3	Q86TU7	594 aa	Predicted RBP	18.87	■□□□□ 0.61
HDAC6-231	ENST00000488905	FAM71A	Q8IYT1	594 aa		18.87	■□□□□ 0.61
HDAC6-231	ENST00000488905	DCAF4L2	Q8NA75	395 aa		18.87	■□□□□ 0.61
HDAC6-231	ENST00000488905	ATP11C	Q8NB49	1132 aa		18.87	■□□□□ 0.61
HDAC6-231	ENST00000488905	TMEM145	Q8NBT3	493 aa		18.87	■□□□□ 0.61
HDAC6-231	ENST00000488905	OR2A12	Q8NGT7	310 aa		18.87	■□□□□ 0.61
HDAC6-231	ENST00000488905	NT5C3B	Q969T7	300 aa		18.87	■□□□□ 0.61
HDAC6-231	ENST00000488905	PGAP3	Q96FM1	320 aa	Predicted RBP	18.87	■□□□□ 0.61
HDAC6-231	ENST00000488905	DCBLD2	Q96PD2	775 aa		18.87	■□□□□ 0.61
HDAC6-231	ENST00000488905	FARP1	Q9Y4F1	1045 aa	Predicted RBP	18.87	■□□□□ 0.61
HDAC6-231	ENST00000488905	PAXBP1	Q9Y5B6	917 aa		18.87	■□□□□ 0.61
HDAC6-231	ENST00000488905	SNX10	Q9Y5X0	201 aa		18.87	■□□□□ 0.61
HDAC6-231	ENST00000488905	PRLR	P16471	622 aa		18.86	■□□□□ 0.61
HDAC6-231	ENST00000488905	CHRNA3	P32297	505 aa		18.86	■□□□□ 0.61
HDAC6-231	ENST00000488905	CDH5	P33151	784 aa	Predicted RBP	18.86	■□□□□ 0.61
HDAC6-231	ENST00000488905	SCNN1A	P37088	669 aa		18.86	■□□□□ 0.61
HDAC6-231	ENST00000488905	ABCG1	P45844	678 aa		18.86	■□□□□ 0.61
HDAC6-231	ENST00000488905	CLCN6	P51797	869 aa		18.86	■□□□□ 0.61
HDAC6-231	ENST00000488905	RNASE9	P60153	205 aa	Known RBP	18.86	■□□□□ 0.61
HDAC6-231	ENST00000488905	UBE2H	P62256	183 aa		18.86	■□□□□ 0.61
HDAC6-231	ENST00000488905	DEUP1	Q05D60	604 aa		18.86	■□□□□ 0.61
HDAC6-231	ENST00000488905	TARDBP	Q13148	414 aa	Known RBP eCLIP	18.86	■□□□□ 0.61
HDAC6-231	ENST00000488905	TPD52L1	Q16890	204 aa	Predicted RBP	18.86	■□□□□ 0.61
HDAC6-231	ENST00000488905	FAM102A	Q5T9C2	384 aa	Predicted RBP	18.86	■□□□□ 0.61
HDAC6-231	ENST00000488905	C22orf39	Q6P5X5	142 aa		18.86	■□□□□ 0.61
HDAC6-231	ENST00000488905	TFAP2D	Q7Z6R9	452 aa		18.86	■□□□□ 0.61
HDAC6-231	ENST00000488905	TMEM35B	Q8NCS4	154 aa		18.86	■□□□□ 0.61
HDAC6-231	ENST00000488905	TBCB	Q99426	244 aa		18.86	■□□□□ 0.61
HDAC6-231	ENST00000488905	MYOC	Q99972	504 aa		18.86	■□□□□ 0.61
HDAC6-231	ENST00000488905		A0A1W2PQU0	124 aa		18.85	■□□□□ 0.61
HDAC6-231	ENST00000488905		K7ERQ8	282 aa		18.85	■□□□□ 0.61
HDAC6-231	ENST00000488905	SMAD6	O43541	496 aa	Known RBP	18.85	■□□□□ 0.61
HDAC6-231	ENST00000488905	PRNP	P04156	253 aa		18.85	■□□□□ 0.61
HDAC6-231	ENST00000488905	THEGL	P0DJG4	465 aa		18.85	■□□□□ 0.61
HDAC6-231	ENST00000488905	GABRB2	P47870	512 aa		18.85	■□□□□ 0.61
HDAC6-231	ENST00000488905	BPIFB4	P59827	614 aa		18.85	■□□□□ 0.61
HDAC6-231	ENST00000488905	PROX2	Q3B8N5	592 aa		18.85	■□□□□ 0.61
HDAC6-231	ENST00000488905	NEK5	Q6P3R8	708 aa		18.85	■□□□□ 0.61
HDAC6-231	ENST00000488905	LRRC31	Q6UY01	552 aa		18.85	■□□□□ 0.61
HDAC6-231	ENST00000488905	LINGO4	Q6UY18	593 aa		18.85	■□□□□ 0.61
HDAC6-231	ENST00000488905	HORMAD1	Q86X24	394 aa		18.85	■□□□□ 0.61
HDAC6-231	ENST00000488905	MLKL	Q8NB16	471 aa		18.85	■□□□□ 0.61
HDAC6-231	ENST00000488905	TMIE	Q8NEW7	156 aa		18.85	■□□□□ 0.61
HDAC6-231	ENST00000488905	GRIN3A	Q8TCU5	1115 aa		18.85	■□□□□ 0.61
HDAC6-231	ENST00000488905	ARRDC3	Q96B67	414 aa		18.85	■□□□□ 0.61
HDAC6-231	ENST00000488905	KLHDC7B	Q96G42	594 aa		18.85	■□□□□ 0.61
HDAC6-231	ENST00000488905	CRELD1	Q96HD1	420 aa		18.85	■□□□□ 0.61
HDAC6-231	ENST00000488905	PDCL3	Q9H2J4	239 aa		18.85	■□□□□ 0.61
HDAC6-231	ENST00000488905	DYRK4	Q9NR20	520 aa		18.85	■□□□□ 0.61
HDAC6-231	ENST00000488905	MPP6	Q9NZW5	540 aa		18.85	■□□□□ 0.61
HDAC6-231	ENST00000488905	IGLV3-10	A0A075B6K4	115 aa		18.84	■□□□□ 0.61
HDAC6-231	ENST00000488905		A0A0D9SEW6	157 aa		18.84	■□□□□ 0.61
HDAC6-231	ENST00000488905	DRGX	A6NNA5	263 aa		18.84	■□□□□ 0.61
HDAC6-231	ENST00000488905	SLC31A1	O15431	190 aa		18.84	■□□□□ 0.61
HDAC6-231	ENST00000488905	F9	P00740	461 aa		18.84	■□□□□ 0.61
HDAC6-231	ENST00000488905	CYP11B1	P15538	503 aa		18.84	■□□□□ 0.61
HDAC6-231	ENST00000488905	ACP1	P24666	158 aa		18.84	■□□□□ 0.61
HDAC6-231	ENST00000488905	CCDC15	Q0P6D6	951 aa		18.84	■□□□□ 0.61
HDAC6-231	ENST00000488905	RAPGEF1	Q13905	1077 aa		18.84	■□□□□ 0.61
HDAC6-231	ENST00000488905	SLC25A52	Q3SY17	297 aa		18.84	■□□□□ 0.61
HDAC6-231	ENST00000488905	MIIP	Q5JXC2	388 aa		18.84	■□□□□ 0.61
HDAC6-231	ENST00000488905	ACBD5	Q5T8D3	534 aa	Predicted RBP	18.84	■□□□□ 0.61
HDAC6-231	ENST00000488905	DPY19L2P1	Q6NXN4	242 aa		18.84	■□□□□ 0.61
HDAC6-231	ENST00000488905	XYLT1	Q86Y38	959 aa		18.84	■□□□□ 0.61
HDAC6-231	ENST00000488905	FAM114A1	Q8IWE2	563 aa		18.84	■□□□□ 0.61
HDAC6-231	ENST00000488905	CHST14	Q8NCH0	376 aa		18.84	■□□□□ 0.61
HDAC6-231	ENST00000488905	RFFL	Q8WZ73	363 aa		18.84	■□□□□ 0.61
HDAC6-231	ENST00000488905	KLK6	Q92876	244 aa		18.84	■□□□□ 0.61
HDAC6-231	ENST00000488905	BBC3	Q96PG8	261 aa	Predicted RBP	18.84	■□□□□ 0.61
HDAC6-231	ENST00000488905	NRSN2	Q9GZP1	204 aa		18.84	■□□□□ 0.61
HDAC6-231	ENST00000488905	NDST4	Q9H3R1	872 aa		18.84	■□□□□ 0.61
HDAC6-231	ENST00000488905	FZD3	Q9NPG1	666 aa		18.84	■□□□□ 0.61
HDAC6-231	ENST00000488905	TMPRSS4	Q9NRS4	437 aa		18.84	■□□□□ 0.61
HDAC6-231	ENST00000488905	TMEM51	Q9NW97	253 aa		18.84	■□□□□ 0.61
HDAC6-231	ENST00000488905	FHOD1	Q9Y613	1164 aa		18.84	■□□□□ 0.61
HDAC6-231	ENST00000488905	MGA	Q8IWI9	3026 aa		18.83	■□□□□ 0.61
HDAC6-231	ENST00000488905	RNF103	O00237	685 aa		18.83	■□□□□ 0.6
HDAC6-231	ENST00000488905	TRIM38	O00635	465 aa		18.83	■□□□□ 0.6
HDAC6-231	ENST00000488905	SIGLEC6	O43699	453 aa		18.83	■□□□□ 0.6
HDAC6-231	ENST00000488905	PRKCSH	P14314	528 aa	Predicted RBP	18.83	■□□□□ 0.6
HDAC6-231	ENST00000488905	HNRNPA2B1	P22626	353 aa	Known RBP	18.83	■□□□□ 0.6
HDAC6-231	ENST00000488905	GLDC	P23378	1020 aa		18.83	■□□□□ 0.6
HDAC6-231	ENST00000488905	OR1E1	P30953	314 aa		18.83	■□□□□ 0.6

Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms