RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 SPACA3Q8IXA5 215 aa13.35□□□□□ -0.27
HDAC6-227ENST00000485102 ZNF843Q8N446 348 aa13.35□□□□□ -0.27
HDAC6-227ENST00000485102 ZNF248Q8NDW4 579 aa13.35□□□□□ -0.27
HDAC6-227ENST00000485102 OR2A12Q8NGT7 310 aa13.35□□□□□ -0.27
HDAC6-227ENST00000485102 FAM204AQ9H8W3 233 aa13.35□□□□□ -0.27
HDAC6-227ENST00000485102 GPR27Q9NS67 375 aa13.35□□□□□ -0.27
HDAC6-227ENST00000485102 RRN3Q9NYV6 651 aa13.35□□□□□ -0.27
HDAC6-227ENST00000485102 VPS28Q9UK41 221 aa13.35□□□□□ -0.27
HDAC6-227ENST00000485102 MAN1B1Q9UKM7 699 aa13.35□□□□□ -0.27
HDAC6-227ENST00000485102 VANGL2Q9ULK5 521 aa13.35□□□□□ -0.27
HDAC6-227ENST00000485102 SSUH2Q9Y2M2 353 aa13.35□□□□□ -0.27
HDAC6-227ENST00000485102 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.35□□□□□ -0.27
HDAC6-227ENST00000485102 HS3ST4Q9Y661 456 aa13.35□□□□□ -0.27
HDAC6-227ENST00000485102 HS3ST3A1Q9Y663 406 aa13.35□□□□□ -0.27
HDAC6-227ENST00000485102 ATMQ13315 3056 aa13.34□□□□□ -0.27
HDAC6-227ENST00000485102 A0A1W2PQU0 124 aa13.34□□□□□ -0.27
HDAC6-227ENST00000485102 NEMP2A6NFY4 417 aa13.34□□□□□ -0.27
HDAC6-227ENST00000485102 SLC31A1O15431 190 aa13.34□□□□□ -0.27
HDAC6-227ENST00000485102 THAP12O43422 761 aa13.34□□□□□ -0.27
HDAC6-227ENST00000485102 OPA1O60313 960 aa13.34□□□□□ -0.27
HDAC6-227ENST00000485102 SDC3O75056 442 aa13.34□□□□□ -0.27
HDAC6-227ENST00000485102 MBD3O95983 291 aa13.34□□□□□ -0.27
HDAC6-227ENST00000485102 PRNPP04156 253 aa13.34□□□□□ -0.27
HDAC6-227ENST00000485102 CTSLP07711 333 aa13.34□□□□□ -0.27
HDAC6-227ENST00000485102 SRCP12931 536 aa13.34□□□□□ -0.27
HDAC6-227ENST00000485102 HNRNPA2B1P22626 353 aaKnown RBP13.34□□□□□ -0.27
HDAC6-227ENST00000485102 AKT2P31751 481 aa13.34□□□□□ -0.27
HDAC6-227ENST00000485102 CHRNA3P32297 505 aa13.34□□□□□ -0.27
HDAC6-227ENST00000485102 NOS2P35228 1153 aa13.34□□□□□ -0.27
HDAC6-227ENST00000485102 LSSP48449 732 aa13.34□□□□□ -0.27
HDAC6-227ENST00000485102 UCNP55089 124 aa13.34□□□□□ -0.27
HDAC6-227ENST00000485102 SNX16P57768 344 aa13.34□□□□□ -0.27
HDAC6-227ENST00000485102 ERVPABLB-1P60509 514 aa13.34□□□□□ -0.27
HDAC6-227ENST00000485102 CENPCQ03188 943 aa13.34□□□□□ -0.27
HDAC6-227ENST00000485102 PCSK4Q6UW60 755 aa13.34□□□□□ -0.27
HDAC6-227ENST00000485102 SLC26A9Q7LBE3 791 aa13.34□□□□□ -0.27
HDAC6-227ENST00000485102 SETD3Q86TU7 594 aaPredicted RBP13.34□□□□□ -0.27
HDAC6-227ENST00000485102 ZNF397Q8NF99 534 aaPredicted RBP13.34□□□□□ -0.27
HDAC6-227ENST00000485102 SNRNP27Q8WVK2 155 aaKnown RBP13.34□□□□□ -0.27
HDAC6-227ENST00000485102 NELFBQ8WX92 580 aa13.34□□□□□ -0.27
HDAC6-227ENST00000485102 RNF34Q969K3 372 aa13.34□□□□□ -0.27
HDAC6-227ENST00000485102 GRAMD1AQ96CP6 724 aa13.34□□□□□ -0.27
HDAC6-227ENST00000485102 PPP1R13BQ96KQ4 1090 aa13.34□□□□□ -0.27
HDAC6-227ENST00000485102 CCDC114Q96M63 670 aa13.34□□□□□ -0.27
HDAC6-227ENST00000485102 CPXM1Q96SM3 734 aa13.34□□□□□ -0.27
HDAC6-227ENST00000485102 C2orf49Q9BVC5 232 aaPredicted RBP13.34□□□□□ -0.27
HDAC6-227ENST00000485102 DUSP23Q9BVJ7 150 aa13.34□□□□□ -0.27
HDAC6-227ENST00000485102 HDAC8Q9BY41 377 aa13.34□□□□□ -0.27
HDAC6-227ENST00000485102 UCKL1Q9NWZ5 548 aa13.34□□□□□ -0.27
HDAC6-227ENST00000485102 NLGN3Q9NZ94 848 aa13.34□□□□□ -0.27
HDAC6-227ENST00000485102 DOCK4Q8N1I0 1966 aa13.33□□□□□ -0.28
HDAC6-227ENST00000485102 DRGXA6NNA5 263 aa13.33□□□□□ -0.28
HDAC6-227ENST00000485102 BECN2A8MW95 431 aa13.33□□□□□ -0.28
HDAC6-227ENST00000485102 ERVH48-1M5A8F1 160 aa13.33□□□□□ -0.28
HDAC6-227ENST00000485102 SCAMP1O15126 338 aa13.33□□□□□ -0.28
HDAC6-227ENST00000485102 PAGE1O75459 146 aa13.33□□□□□ -0.28
HDAC6-227ENST00000485102 MT-CO1P00395 513 aa13.33□□□□□ -0.28
HDAC6-227ENST00000485102 ALPPL2P10696 532 aa13.33□□□□□ -0.28
HDAC6-227ENST00000485102 PLA2G2AP14555 144 aa13.33□□□□□ -0.28
HDAC6-227ENST00000485102 DUSP3P51452 185 aaPredicted RBP13.33□□□□□ -0.28
HDAC6-227ENST00000485102 IRAK1P51617 712 aa13.33□□□□□ -0.28
HDAC6-227ENST00000485102 PCBP4P57723 403 aaKnown RBP13.33□□□□□ -0.28
HDAC6-227ENST00000485102 DAB2P98082 770 aa13.33□□□□□ -0.28
HDAC6-227ENST00000485102 MORC3Q14149 939 aa13.33□□□□□ -0.28
HDAC6-227ENST00000485102 TMEM259Q4ZIN3 620 aa13.33□□□□□ -0.28
HDAC6-227ENST00000485102 BRMS1LQ5PSV4 323 aa13.33□□□□□ -0.28
HDAC6-227ENST00000485102 OLFML1Q6UWY5 402 aa13.33□□□□□ -0.28
HDAC6-227ENST00000485102 C11orf57Q6ZUT1 292 aaPredicted RBP13.33□□□□□ -0.28
HDAC6-227ENST00000485102 C14orf80Q86SX3 495 aa13.33□□□□□ -0.28
HDAC6-227ENST00000485102 ZSCAN30Q86W11 494 aa13.33□□□□□ -0.28
HDAC6-227ENST00000485102 ZDHHC17Q8IUH5 632 aa13.33□□□□□ -0.28
HDAC6-227ENST00000485102 ZNF683Q8IZ20 524 aa13.33□□□□□ -0.28
HDAC6-227ENST00000485102 DCAF4L2Q8NA75 395 aa13.33□□□□□ -0.28
HDAC6-227ENST00000485102 OR13H1Q8NG92 308 aa13.33□□□□□ -0.28
HDAC6-227ENST00000485102 SHC3Q92529 594 aa13.33□□□□□ -0.28
HDAC6-227ENST00000485102 NT5C3BQ969T7 300 aa13.33□□□□□ -0.28
HDAC6-227ENST00000485102 PGAP3Q96FM1 320 aaPredicted RBP13.33□□□□□ -0.28
HDAC6-227ENST00000485102 C1orf74Q96LT6 269 aa13.33□□□□□ -0.28
HDAC6-227ENST00000485102 NOX5Q96PH1 765 aa13.33□□□□□ -0.28
HDAC6-227ENST00000485102 DEPDC7Q96QD5 511 aa13.33□□□□□ -0.28
HDAC6-227ENST00000485102 PSMB7Q99436 277 aa13.33□□□□□ -0.28
HDAC6-227ENST00000485102 ACP6Q9NPH0 428 aa13.33□□□□□ -0.28
HDAC6-227ENST00000485102 EVA1BQ9NVM1 165 aa13.33□□□□□ -0.28
HDAC6-227ENST00000485102 ARHGEF38Q9NXL2 777 aa13.33□□□□□ -0.28
HDAC6-227ENST00000485102 ZFR2Q9UPR6 939 aaKnown RBP13.33□□□□□ -0.28
HDAC6-227ENST00000485102 CA5BQ9Y2D0 317 aa13.33□□□□□ -0.28
HDAC6-227ENST00000485102 CSNK1G3Q9Y6M4 447 aa13.33□□□□□ -0.28
HDAC6-227ENST00000485102 RP1P56715 2156 aa13.32□□□□□ -0.28
HDAC6-227ENST00000485102 LY6G6EA0A0G2JKS1 128 aa13.32□□□□□ -0.28
HDAC6-227ENST00000485102 CXorf51AA0A1B0GTR3 108 aa13.32□□□□□ -0.28
HDAC6-227ENST00000485102 GTPBP10A4D1E9 387 aaKnown RBP13.32□□□□□ -0.28
HDAC6-227ENST00000485102 KPNA3O00505 521 aaPredicted RBP13.32□□□□□ -0.28
HDAC6-227ENST00000485102 FGFR1OPO95684 399 aaKnown RBP13.32□□□□□ -0.28
HDAC6-227ENST00000485102 PRLRP16471 622 aa13.32□□□□□ -0.28
HDAC6-227ENST00000485102 CXCR3P49682 368 aa13.32□□□□□ -0.28
HDAC6-227ENST00000485102 HNRNPKP61978 463 aaKnown RBP eCLIP13.32□□□□□ -0.28
HDAC6-227ENST00000485102 SLC6A3Q01959 620 aa13.32□□□□□ -0.28
HDAC6-227ENST00000485102 RHDQ02161 417 aa13.32□□□□□ -0.28
HDAC6-227ENST00000485102 SLC20A2Q08357 652 aa13.32□□□□□ -0.28
HDAC6-227ENST00000485102 CCDC173Q0VFZ6 552 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms