RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 MRFAP1Q9Y605 127 aa12.49□□□□□ -0.41
SDC1-206ENST00000482879 BCLAF3A2AJT9 711 aaKnown RBP12.48□□□□□ -0.41
SDC1-206ENST00000482879 K7EQS6 105 aa12.48□□□□□ -0.41
SDC1-206ENST00000482879 MATN3O15232 486 aa12.48□□□□□ -0.41
SDC1-206ENST00000482879 MT-CO1P00395 513 aa12.48□□□□□ -0.41
SDC1-206ENST00000482879 NNMTP40261 264 aa12.48□□□□□ -0.41
SDC1-206ENST00000482879 SEC13P55735 322 aa12.48□□□□□ -0.41
SDC1-206ENST00000482879 GEMIN4P57678 1058 aaKnown RBP12.48□□□□□ -0.41
SDC1-206ENST00000482879 STARD6P59095 220 aa12.48□□□□□ -0.41
SDC1-206ENST00000482879 ZNF33AQ06730 810 aa12.48□□□□□ -0.41
SDC1-206ENST00000482879 BYSLQ13895 437 aaKnown RBP12.48□□□□□ -0.41
SDC1-206ENST00000482879 PRKD1Q15139 912 aaPredicted RBP12.48□□□□□ -0.41
SDC1-206ENST00000482879 EMC10Q5UCC4 262 aa12.48□□□□□ -0.41
SDC1-206ENST00000482879 EZH1Q92800 747 aaPredicted RBP12.48□□□□□ -0.41
SDC1-206ENST00000482879 NKD2Q969F2 451 aaPredicted RBP12.48□□□□□ -0.41
SDC1-206ENST00000482879 RPL10LQ96L21 214 aaKnown RBP12.48□□□□□ -0.41
SDC1-206ENST00000482879 PDFQ9HBH1 243 aa12.48□□□□□ -0.41
SDC1-206ENST00000482879 SEPT10Q9P0V9 454 aa12.48□□□□□ -0.41
SDC1-206ENST00000482879 ZNF148Q9UQR1 794 aa12.48□□□□□ -0.41
SDC1-206ENST00000482879 MRPS17Q9Y2R5 130 aaKnown RBP12.48□□□□□ -0.41
SDC1-206ENST00000482879 STARD13Q9Y3M8 1113 aa12.48□□□□□ -0.41
SDC1-206ENST00000482879 ACTL7AQ9Y615 435 aa12.48□□□□□ -0.41
SDC1-206ENST00000482879 ANTXRLA6NF34 631 aa12.47□□□□□ -0.41
SDC1-206ENST00000482879 KCNK1O00180 336 aa12.47□□□□□ -0.41
SDC1-206ENST00000482879 STK25O00506 426 aa12.47□□□□□ -0.41
SDC1-206ENST00000482879 KCNN4O15554 427 aa12.47□□□□□ -0.41
SDC1-206ENST00000482879 MTSS1O43312 755 aa12.47□□□□□ -0.41
SDC1-206ENST00000482879 PHF2O75151 1096 aa12.47□□□□□ -0.41
SDC1-206ENST00000482879 NEBLO76041 1014 aa12.47□□□□□ -0.41
SDC1-206ENST00000482879 PEX11BO96011 259 aa12.47□□□□□ -0.41
SDC1-206ENST00000482879 SRPRAP08240 638 aaKnown RBP12.47□□□□□ -0.41
SDC1-206ENST00000482879 CCNB1P14635 433 aa12.47□□□□□ -0.41
SDC1-206ENST00000482879 VAV1P15498 845 aa12.47□□□□□ -0.41
SDC1-206ENST00000482879 RBL1P28749 1068 aa12.47□□□□□ -0.41
SDC1-206ENST00000482879 KCNJ1P48048 391 aa12.47□□□□□ -0.41
SDC1-206ENST00000482879 STK19P49842 368 aaPredicted RBP12.47□□□□□ -0.41
SDC1-206ENST00000482879 SERPINH1P50454 418 aaKnown RBP12.47□□□□□ -0.41
SDC1-206ENST00000482879 RENBPP51606 427 aa12.47□□□□□ -0.41
SDC1-206ENST00000482879 CLCN6P51797 869 aa12.47□□□□□ -0.41
SDC1-206ENST00000482879 ST8SIA6P61647 398 aa12.47□□□□□ -0.41
SDC1-206ENST00000482879 LBRQ14739 615 aaKnown RBP12.47□□□□□ -0.41
SDC1-206ENST00000482879 E2F5Q15329 346 aa12.47□□□□□ -0.41
SDC1-206ENST00000482879 CYP1B1Q16678 543 aa12.47□□□□□ -0.41
SDC1-206ENST00000482879 FNDC3BQ53EP0 1204 aaKnown RBP12.47□□□□□ -0.41
SDC1-206ENST00000482879 TMCO4Q5TGY1 634 aa12.47□□□□□ -0.41
SDC1-206ENST00000482879 EGFLAMQ63HQ2 1017 aa12.47□□□□□ -0.41
SDC1-206ENST00000482879 HEATR6Q6AI08 1181 aaKnown RBP12.47□□□□□ -0.41
SDC1-206ENST00000482879 DRICH1Q6PGQ1 229 aaPredicted RBP12.47□□□□□ -0.41
SDC1-206ENST00000482879 ATP11CQ8NB49 1132 aa12.47□□□□□ -0.41
SDC1-206ENST00000482879 USP33Q8TEY7 942 aa12.47□□□□□ -0.41
SDC1-206ENST00000482879 HTR3CQ8WXA8 447 aa12.47□□□□□ -0.41
SDC1-206ENST00000482879 MAML1Q92585 1016 aa12.47□□□□□ -0.41
SDC1-206ENST00000482879 FATE1Q969F0 183 aa12.47□□□□□ -0.41
SDC1-206ENST00000482879 ZNF599Q96NL3 588 aa12.47□□□□□ -0.41
SDC1-206ENST00000482879 FERMT1Q9BQL6 677 aa12.47□□□□□ -0.41
SDC1-206ENST00000482879 TMEM121Q9BTD3 319 aa12.47□□□□□ -0.41
SDC1-206ENST00000482879 SLCO3A1Q9UIG8 710 aa12.47□□□□□ -0.41
SDC1-206ENST00000482879 HS3ST2Q9Y278 367 aa12.47□□□□□ -0.41
SDC1-206ENST00000482879 DRG1Q9Y295 367 aaKnown RBP12.47□□□□□ -0.41
SDC1-206ENST00000482879 TTC28Q96AY4 2481 aa12.47□□□□□ -0.41
SDC1-206ENST00000482879 ANKRD36A6QL64 1941 aa12.47□□□□□ -0.41
SDC1-206ENST00000482879 TECTAO75443 2155 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 CXorf51AA0A1B0GTR3 108 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 KANSL1LA0AUZ9 987 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 CFAP69A5D8W1 941 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 CCDC188H7C350 402 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 K7ERQ8 282 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 SMAD6O43541 496 aaKnown RBP12.46□□□□□ -0.41
SDC1-206ENST00000482879 DCXO43602 365 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 ZNF189O75820 626 aaPredicted RBP12.46□□□□□ -0.41
SDC1-206ENST00000482879 TMCC1O94876 653 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 CD160O95971 181 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 JCHAINP01591 159 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 ITGAVP06756 1048 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 SRCP12931 536 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 STIP1P31948 543 aaKnown RBP12.46□□□□□ -0.41
SDC1-206ENST00000482879 TIE1P35590 1138 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 COILP38432 576 aaPredicted RBP12.46□□□□□ -0.41
SDC1-206ENST00000482879 KIR2DL1P43626 348 aaPredicted RBP12.46□□□□□ -0.41
SDC1-206ENST00000482879 SIGLEC14Q08ET2 396 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 SLC10A7Q0GE19 358 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 HNRNPDQ14103 355 aaKnown RBP12.46□□□□□ -0.41
SDC1-206ENST00000482879 ZNF234Q14588 700 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 RFTN1Q14699 578 aaPredicted RBP12.46□□□□□ -0.41
SDC1-206ENST00000482879 UBXN2BQ14CS0 331 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 CYTH1Q15438 398 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 OASLQ15646 514 aaKnown RBP12.46□□□□□ -0.41
SDC1-206ENST00000482879 DLG2Q15700 870 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 PTPRNQ16849 979 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 ACCSLQ4AC99 568 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 FBXO43Q4G163 708 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 INO80DQ53TQ3 878 aaPredicted RBP12.46□□□□□ -0.41
SDC1-206ENST00000482879 MARC1Q5VT66 337 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 KLHL7Q8IXQ5 586 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 BBS5Q8N3I7 341 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 SH2D3CQ8N5H7 860 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 ZNF513Q8N8E2 541 aaPredicted RBP12.46□□□□□ -0.41
SDC1-206ENST00000482879 FAM71DQ8N9W8 422 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 C12orf50Q8NA57 414 aaPredicted RBP12.46□□□□□ -0.41
SDC1-206ENST00000482879 SPATA4Q8NEY3 305 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms