RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 MSANTD4Q8NCY6 345 aa19.26■□□□□ 0.67
CCDC88B-206ENST00000473405 OR2A12Q8NGT7 310 aa19.26■□□□□ 0.67
CCDC88B-206ENST00000473405 RAB6CQ9H0N0 254 aa19.26■□□□□ 0.67
CCDC88B-206ENST00000473405 FAM207AQ9NSI2 230 aaPredicted RBP19.26■□□□□ 0.67
CCDC88B-206ENST00000473405 TMEM51Q9NW97 253 aa19.26■□□□□ 0.67
CCDC88B-206ENST00000473405 RALYQ9UKM9 306 aaKnown RBP19.26■□□□□ 0.67
CCDC88B-206ENST00000473405 ARID1BQ8NFD5 2236 aaPredicted RBP19.26■□□□□ 0.67
CCDC88B-206ENST00000473405 C1QTNF3-AMACRE9PGA6 284 aa19.25■□□□□ 0.67
CCDC88B-206ENST00000473405 SMAD6O43541 496 aaKnown RBP19.25■□□□□ 0.67
CCDC88B-206ENST00000473405 TNFSF14O43557 240 aa19.25■□□□□ 0.67
CCDC88B-206ENST00000473405 BNIP3LO60238 219 aa19.25■□□□□ 0.67
CCDC88B-206ENST00000473405 ZNF18P17022 549 aa19.25■□□□□ 0.67
CCDC88B-206ENST00000473405 MMP8P22894 467 aa19.25■□□□□ 0.67
CCDC88B-206ENST00000473405 GLDCP23378 1020 aa19.25■□□□□ 0.67
CCDC88B-206ENST00000473405 RRM1P23921 792 aa19.25■□□□□ 0.67
CCDC88B-206ENST00000473405 NXPH1P58417 271 aa19.25■□□□□ 0.67
CCDC88B-206ENST00000473405 POLR2FP61218 127 aaKnown RBP19.25■□□□□ 0.67
CCDC88B-206ENST00000473405 KRT83P78385 493 aa19.25■□□□□ 0.67
CCDC88B-206ENST00000473405 FMO1Q01740 532 aa19.25■□□□□ 0.67
CCDC88B-206ENST00000473405 CDR2Q01850 454 aa19.25■□□□□ 0.67
CCDC88B-206ENST00000473405 ACBD5Q5T8D3 534 aaPredicted RBP19.25■□□□□ 0.67
CCDC88B-206ENST00000473405 PIP5KL1Q5T9C9 394 aa19.25■□□□□ 0.67
CCDC88B-206ENST00000473405 NAPEPLDQ6IQ20 393 aa19.25■□□□□ 0.67
CCDC88B-206ENST00000473405 LRRC31Q6UY01 552 aa19.25■□□□□ 0.67
CCDC88B-206ENST00000473405 LINGO4Q6UY18 593 aa19.25■□□□□ 0.67
CCDC88B-206ENST00000473405 FAM131BQ86XD5 332 aa19.25■□□□□ 0.67
CCDC88B-206ENST00000473405 ZNF677Q86XU0 584 aa19.25■□□□□ 0.67
CCDC88B-206ENST00000473405 GATAD2AQ86YP4 633 aa19.25■□□□□ 0.67
CCDC88B-206ENST00000473405 ATP11CQ8NB49 1132 aa19.25■□□□□ 0.67
CCDC88B-206ENST00000473405 SKA1Q96BD8 255 aa19.25■□□□□ 0.67
CCDC88B-206ENST00000473405 HAPLN3Q96S86 360 aa19.25■□□□□ 0.67
CCDC88B-206ENST00000473405 METTL5Q9NRN9 209 aaKnown RBP19.25■□□□□ 0.67
CCDC88B-206ENST00000473405 SIK3Q9Y2K2 1263 aa19.25■□□□□ 0.67
CCDC88B-206ENST00000473405 GOLGA8CPA6NN73 597 aa19.24■□□□□ 0.67
CCDC88B-206ENST00000473405 TLR4O00206 839 aa19.24■□□□□ 0.67
CCDC88B-206ENST00000473405 RNF103O00237 685 aa19.24■□□□□ 0.67
CCDC88B-206ENST00000473405 TAF4O00268 1085 aa19.24■□□□□ 0.67
CCDC88B-206ENST00000473405 ENDOD1O94919 500 aa19.24■□□□□ 0.67
CCDC88B-206ENST00000473405 CYP1A1P04798 512 aaPredicted RBP19.24■□□□□ 0.67
CCDC88B-206ENST00000473405 OR1E1P30953 314 aa19.24■□□□□ 0.67
CCDC88B-206ENST00000473405 MAT2AP31153 395 aaKnown RBP19.24■□□□□ 0.67
CCDC88B-206ENST00000473405 SCAPQ12770 1279 aa19.24■□□□□ 0.67
CCDC88B-206ENST00000473405 C6orf118Q5T5N4 469 aa19.24■□□□□ 0.67
CCDC88B-206ENST00000473405 TMPRSS7Q7RTY8 843 aa19.24■□□□□ 0.67
CCDC88B-206ENST00000473405 OR7D4Q8NG98 312 aa19.24■□□□□ 0.67
CCDC88B-206ENST00000473405 SAP25Q8TEE9 199 aa19.24■□□□□ 0.67
CCDC88B-206ENST00000473405 GDF3Q9NR23 364 aa19.24■□□□□ 0.67
CCDC88B-206ENST00000473405 FANCLQ9NW38 375 aa19.24■□□□□ 0.67
CCDC88B-206ENST00000473405 SRGAP2O75044 1071 aa19.23■□□□□ 0.67
CCDC88B-206ENST00000473405 EPHA8P29322 1005 aaPredicted RBP19.23■□□□□ 0.67
CCDC88B-206ENST00000473405 SOX5P35711 763 aa19.23■□□□□ 0.67
CCDC88B-206ENST00000473405 CLCN6P51797 869 aa19.23■□□□□ 0.67
CCDC88B-206ENST00000473405 ATP11AP98196 1134 aa19.23■□□□□ 0.67
CCDC88B-206ENST00000473405 INAVAQ3KP66 663 aa19.23■□□□□ 0.67
CCDC88B-206ENST00000473405 C22orf39Q6P5X5 142 aa19.23■□□□□ 0.67
CCDC88B-206ENST00000473405 PROSER1Q86XN7 944 aa19.23■□□□□ 0.67
CCDC88B-206ENST00000473405 SPATS2Q86XZ4 545 aaKnown RBP19.23■□□□□ 0.67
CCDC88B-206ENST00000473405 MFSD2AQ8NA29 543 aa19.23■□□□□ 0.67
CCDC88B-206ENST00000473405 CHST14Q8NCH0 376 aa19.23■□□□□ 0.67
CCDC88B-206ENST00000473405 SLC30A5Q8TAD4 765 aa19.23■□□□□ 0.67
CCDC88B-206ENST00000473405 ARRDC3Q96B67 414 aa19.23■□□□□ 0.67
CCDC88B-206ENST00000473405 ZYG11BQ9C0D3 744 aa19.23■□□□□ 0.67
CCDC88B-206ENST00000473405 PREBQ9HCU5 417 aa19.23■□□□□ 0.67
CCDC88B-206ENST00000473405 NLRC4Q9NPP4 1024 aa19.23■□□□□ 0.67
CCDC88B-206ENST00000473405 FTSJ1Q9UET6 329 aa19.23■□□□□ 0.67
CCDC88B-206ENST00000473405 NEU3Q9UQ49 428 aa19.23■□□□□ 0.67
CCDC88B-206ENST00000473405 ILVBLA1L0T0 632 aa19.22■□□□□ 0.67
CCDC88B-206ENST00000473405 ZNF821O75541 412 aaPredicted RBP19.22■□□□□ 0.67
CCDC88B-206ENST00000473405 ZMPSTE24O75844 475 aa19.22■□□□□ 0.67
CCDC88B-206ENST00000473405 CHRNA3P32297 505 aa19.22■□□□□ 0.67
CCDC88B-206ENST00000473405 NUDT1P36639 197 aa19.22■□□□□ 0.67
CCDC88B-206ENST00000473405 PTP4A2Q12974 167 aa19.22■□□□□ 0.67
CCDC88B-206ENST00000473405 C15orf59Q2T9L4 293 aaPredicted RBP19.22■□□□□ 0.67
CCDC88B-206ENST00000473405 CCDC14Q49A88 953 aa19.22■□□□□ 0.67
CCDC88B-206ENST00000473405 MANEALQ5VSG8 457 aa19.22■□□□□ 0.67
CCDC88B-206ENST00000473405 ZNF783Q6ZMS7 281 aa19.22■□□□□ 0.67
CCDC88B-206ENST00000473405 PRPF39Q86UA1 669 aaKnown RBP19.22■□□□□ 0.67
CCDC88B-206ENST00000473405 MARCH9Q86YJ5 346 aa19.22■□□□□ 0.67
CCDC88B-206ENST00000473405 TMIEQ8NEW7 156 aa19.22■□□□□ 0.67
CCDC88B-206ENST00000473405 JOSD2Q8TAC2 188 aa19.22■□□□□ 0.67
CCDC88B-206ENST00000473405 C11orf70Q9BRQ4 267 aa19.22■□□□□ 0.67
CCDC88B-206ENST00000473405 ERVMER34-1Q9H9K5 563 aa19.22■□□□□ 0.67
CCDC88B-206ENST00000473405 DMTF1Q9Y222 760 aa19.22■□□□□ 0.67
CCDC88B-206ENST00000473405 ATRXP46100 2492 aa19.22■□□□□ 0.67
CCDC88B-206ENST00000473405 BPTFQ12830 3046 aa19.21■□□□□ 0.67
CCDC88B-206ENST00000473405 CBX4O00257 560 aa19.21■□□□□ 0.67
CCDC88B-206ENST00000473405 KPNA3O00505 521 aaPredicted RBP19.21■□□□□ 0.67
CCDC88B-206ENST00000473405 YKT6O15498 198 aa19.21■□□□□ 0.67
CCDC88B-206ENST00000473405 GJB6O95452 261 aa19.21■□□□□ 0.67
CCDC88B-206ENST00000473405 ANP32AP39687 249 aaKnown RBP19.21■□□□□ 0.67
CCDC88B-206ENST00000473405 SERPINH1P50454 418 aaKnown RBP19.21■□□□□ 0.67
CCDC88B-206ENST00000473405 SLC45A4Q5BKX6 768 aa19.21■□□□□ 0.67
CCDC88B-206ENST00000473405 FKBP15Q5T1M5 1219 aa19.21■□□□□ 0.67
CCDC88B-206ENST00000473405 KANSL1Q7Z3B3 1105 aa19.21■□□□□ 0.67
CCDC88B-206ENST00000473405 PHLDB2Q86SQ0 1253 aa19.21■□□□□ 0.67
CCDC88B-206ENST00000473405 IQCHQ86VS3 1027 aa19.21■□□□□ 0.67
CCDC88B-206ENST00000473405 GRIN3AQ8TCU5 1115 aa19.21■□□□□ 0.67
CCDC88B-206ENST00000473405 RXFP2Q8WXD0 754 aa19.21■□□□□ 0.67
CCDC88B-206ENST00000473405 CCDC114Q96M63 670 aa19.21■□□□□ 0.67
CCDC88B-206ENST00000473405 PCDHB18PQ96TA0 734 aa19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms