RNA–Protein interactions for RNA: ENST00000468925.1

SF3B1-207, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 510 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-207ENST00000468925 CLVS1Q8IUQ0 354 aaPredicted RBP4.95□□□□□ -1.62
SF3B1-207ENST00000468925 CHERPQ8IWX8 916 aaKnown RBP4.95□□□□□ -1.62
SF3B1-207ENST00000468925 CHPFQ8IZ52 775 aa4.95□□□□□ -1.62
SF3B1-207ENST00000468925 BLIDQ8IZY5 108 aa4.95□□□□□ -1.62
SF3B1-207ENST00000468925 THEMISQ8N1K5 641 aaPredicted RBP4.95□□□□□ -1.62
SF3B1-207ENST00000468925 PLD6Q8N2A8 252 aaKnown RBP4.95□□□□□ -1.62
SF3B1-207ENST00000468925 SYNPOQ8N3V7 929 aa4.95□□□□□ -1.62
SF3B1-207ENST00000468925 BANPQ8N9N5 519 aa4.95□□□□□ -1.62
SF3B1-207ENST00000468925 PIK3C3Q8NEB9 887 aa4.95□□□□□ -1.62
SF3B1-207ENST00000468925 EXD1Q8NHP7 514 aa4.95□□□□□ -1.62
SF3B1-207ENST00000468925 MFSD3Q96ES6 412 aa4.95□□□□□ -1.62
SF3B1-207ENST00000468925 DUS3LQ96G46 650 aaKnown RBP4.95□□□□□ -1.62
SF3B1-207ENST00000468925 SHDQ96IW2 340 aa4.95□□□□□ -1.62
SF3B1-207ENST00000468925 CNBD2Q96M20 576 aa4.95□□□□□ -1.62
SF3B1-207ENST00000468925 GCNAQ96QF7 691 aa4.95□□□□□ -1.62
SF3B1-207ENST00000468925 KIFC3Q9BVG8 833 aa4.95□□□□□ -1.62
SF3B1-207ENST00000468925 CCDC106Q9BWC9 280 aa4.95□□□□□ -1.62
SF3B1-207ENST00000468925 ASPSCR1Q9BZE9 553 aa4.95□□□□□ -1.62
SF3B1-207ENST00000468925 TRIM15Q9C019 465 aa4.95□□□□□ -1.62
SF3B1-207ENST00000468925 TMEM168Q9H0V1 697 aa4.95□□□□□ -1.62
SF3B1-207ENST00000468925 SERHL2Q9H4I8 314 aa4.95□□□□□ -1.62
SF3B1-207ENST00000468925 RPF2Q9H7B2 306 aaKnown RBP4.95□□□□□ -1.62
SF3B1-207ENST00000468925 EHMT1Q9H9B1 1298 aa4.95□□□□□ -1.62
SF3B1-207ENST00000468925 CXorf21Q9HAI6 301 aa4.95□□□□□ -1.62
SF3B1-207ENST00000468925 KCNK13Q9HB14 408 aa4.95□□□□□ -1.62
SF3B1-207ENST00000468925 MKNK2Q9HBH9 465 aa4.95□□□□□ -1.62
SF3B1-207ENST00000468925 SLCO1B3Q9NPD5 702 aa4.95□□□□□ -1.62
SF3B1-207ENST00000468925 C12orf4Q9NQ89 552 aa4.95□□□□□ -1.62
SF3B1-207ENST00000468925 SEPT11Q9NVA2 429 aaKnown RBP4.95□□□□□ -1.62
SF3B1-207ENST00000468925 GMIPQ9P107 970 aa4.95□□□□□ -1.62
SF3B1-207ENST00000468925 TBC1D14Q9P2M4 693 aa4.95□□□□□ -1.62
SF3B1-207ENST00000468925 PPARGC1AQ9UBK2 798 aaKnown RBP4.95□□□□□ -1.62
SF3B1-207ENST00000468925 CDH22Q9UJ99 828 aa4.95□□□□□ -1.62
SF3B1-207ENST00000468925 ADAMTS6Q9UKP5 1117 aa4.95□□□□□ -1.62
SF3B1-207ENST00000468925 PSME2Q9UL46 239 aa4.95□□□□□ -1.62
SF3B1-207ENST00000468925 SNX7Q9UNH6 387 aa4.95□□□□□ -1.62
SF3B1-207ENST00000468925 SHOC2Q9UQ13 582 aa4.95□□□□□ -1.62
SF3B1-207ENST00000468925 POMPQ9Y244 141 aa4.95□□□□□ -1.62
SF3B1-207ENST00000468925 EIF3LQ9Y262 564 aaKnown RBP4.95□□□□□ -1.62
SF3B1-207ENST00000468925 ALG6Q9Y672 507 aa4.95□□□□□ -1.62
SF3B1-207ENST00000468925 CHD4Q14839 1912 aa4.95□□□□□ -1.62
SF3B1-207ENST00000468925 FLT1P17948 1338 aa4.95□□□□□ -1.62
SF3B1-207ENST00000468925 MROH5Q6ZUA9 1318 aa4.95□□□□□ -1.62
SF3B1-207ENST00000468925 KDM3AQ9Y4C1 1321 aa4.95□□□□□ -1.62
SF3B1-207ENST00000468925 RICTORQ6R327 1708 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 PEAK1Q9H792 1746 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 CCDC88AQ3V6T2 1871 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 LAMB1P07942 1786 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 OR5K3A6NET4 321 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 CAPN8A6NHC0 703 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 IRS4O14654 1257 aaPredicted RBP4.94□□□□□ -1.62
SF3B1-207ENST00000468925 MSI1O43347 362 aaKnown RBP4.94□□□□□ -1.62
SF3B1-207ENST00000468925 DFNA5O60443 496 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 LPXNO60711 386 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 PTTG1O95997 202 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 MT-ND3P03897 115 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 PRNPP04156 253 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 IFNA16P05015 189 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 HMGN1P05114 100 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 UGT2B4P06133 528 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 ENO1P06733 434 aaKnown RBP4.94□□□□□ -1.62
SF3B1-207ENST00000468925 RALBP11234 206 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 NCAM1P13591 858 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 STMN1P16949 149 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 ATF7P17544 494 aaPredicted RBP4.94□□□□□ -1.62
SF3B1-207ENST00000468925 ENPP1P22413 925 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 CFL1P23528 166 aaKnown RBP4.94□□□□□ -1.62
SF3B1-207ENST00000468925 EEF1DP29692 281 aaKnown RBP4.94□□□□□ -1.62
SF3B1-207ENST00000468925 MCM7P33993 719 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 RPA3P35244 121 aaPredicted RBP4.94□□□□□ -1.62
SF3B1-207ENST00000468925 IDUAP35475 653 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 SOX5P35711 763 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 CPOXP36551 454 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 NAMPTP43490 491 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 STT3AP46977 705 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 LEPRP48357 1165 aaKnown RBP4.94□□□□□ -1.62
SF3B1-207ENST00000468925 MAPKAPK2P49137 400 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 BMXP51813 675 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 ITGA8P53708 1063 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 MAP3K7CLP57077 242 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 DEFA1P59665 94 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 DEFA3P59666 94 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 YWHAGP61981 247 aaKnown RBP eCLIP4.94□□□□□ -1.62
SF3B1-207ENST00000468925 PHC1P78364 1004 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 PPP2R2BQ00005 443 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 NFKB2Q00653 900 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 SCRN3Q0VDG4 424 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 BST2Q10589 180 aaKnown RBP4.94□□□□□ -1.62
SF3B1-207ENST00000468925 SF3A3Q12874 501 aaKnown RBP eCLIP4.94□□□□□ -1.62
SF3B1-207ENST00000468925 TARDBPQ13148 414 aaKnown RBP eCLIP4.94□□□□□ -1.62
SF3B1-207ENST00000468925 CCNIQ14094 377 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 RFTN1Q14699 578 aaPredicted RBP4.94□□□□□ -1.62
SF3B1-207ENST00000468925 CPSF6Q16630 551 aaKnown RBP eCLIP4.94□□□□□ -1.62
SF3B1-207ENST00000468925 C21orf62-AS1Q17RA5 79 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 LRRC36Q1X8D7 754 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 ZNF181Q2M3W8 571 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 SPATS1Q496A3 300 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 MTERF2Q49AM1 385 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 CEP55Q53EZ4 464 aa4.94□□□□□ -1.62
SF3B1-207ENST00000468925 DCAF6Q58WW2 860 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms