RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 FGGP02679 453 aa15.5■□□□□ 0.07
NPHP4-205ENST00000466897 GLDCP23378 1020 aa15.5■□□□□ 0.07
NPHP4-205ENST00000466897 SERPINH1P50454 418 aaKnown RBP15.5■□□□□ 0.07
NPHP4-205ENST00000466897 OTUD4Q01804 1114 aaKnown RBP15.5■□□□□ 0.07
NPHP4-205ENST00000466897 UBXN2BQ14CS0 331 aa15.5■□□□□ 0.07
NPHP4-205ENST00000466897 PRKD1Q15139 912 aaPredicted RBP15.5■□□□□ 0.07
NPHP4-205ENST00000466897 LLGL1Q15334 1064 aa15.5■□□□□ 0.07
NPHP4-205ENST00000466897 SIX1Q15475 284 aaPredicted RBP15.5■□□□□ 0.07
NPHP4-205ENST00000466897 CCDC181Q5TID7 509 aa15.5■□□□□ 0.07
NPHP4-205ENST00000466897 NPNTQ6UXI9 565 aa15.5■□□□□ 0.07
NPHP4-205ENST00000466897 CCDC105Q8IYK2 499 aa15.5■□□□□ 0.07
NPHP4-205ENST00000466897 SH2D3CQ8N5H7 860 aa15.5■□□□□ 0.07
NPHP4-205ENST00000466897 ZNF513Q8N8E2 541 aaPredicted RBP15.5■□□□□ 0.07
NPHP4-205ENST00000466897 ACTL9Q8TC94 416 aa15.5■□□□□ 0.07
NPHP4-205ENST00000466897 USP33Q8TEY7 942 aa15.5■□□□□ 0.07
NPHP4-205ENST00000466897 MAML1Q92585 1016 aa15.5■□□□□ 0.07
NPHP4-205ENST00000466897 CEP44Q9C0F1 390 aa15.5■□□□□ 0.07
NPHP4-205ENST00000466897 TMEM245Q9H330 911 aa15.5■□□□□ 0.07
NPHP4-205ENST00000466897 SP110Q9HB58 689 aa15.5■□□□□ 0.07
NPHP4-205ENST00000466897 HOMER3Q9NSC5 361 aa15.5■□□□□ 0.07
NPHP4-205ENST00000466897 NDRG2Q9UN36 371 aaKnown RBP15.5■□□□□ 0.07
NPHP4-205ENST00000466897 ANKRD36A6QL64 1941 aa15.49■□□□□ 0.07
NPHP4-205ENST00000466897 TCRBV7S2A1N4TA0A589 114 aa15.49■□□□□ 0.07
NPHP4-205ENST00000466897 TMEM221A6NGB7 291 aa15.49■□□□□ 0.07
NPHP4-205ENST00000466897 FAM170BA6NMN3 283 aa15.49■□□□□ 0.07
NPHP4-205ENST00000466897 M0R296 226 aa15.49■□□□□ 0.07
NPHP4-205ENST00000466897 MTSS1O43312 755 aa15.49■□□□□ 0.07
NPHP4-205ENST00000466897 PEX11BO96011 259 aa15.49■□□□□ 0.07
NPHP4-205ENST00000466897 NNMTP40261 264 aa15.49■□□□□ 0.07
NPHP4-205ENST00000466897 CTSOP43234 321 aaPredicted RBP15.49■□□□□ 0.07
NPHP4-205ENST00000466897 ST8SIA6P61647 398 aa15.49■□□□□ 0.07
NPHP4-205ENST00000466897 HNRNPDQ14103 355 aaKnown RBP15.49■□□□□ 0.07
NPHP4-205ENST00000466897 ZNF234Q14588 700 aa15.49■□□□□ 0.07
NPHP4-205ENST00000466897 LONRF2Q1L5Z9 754 aa15.49■□□□□ 0.07
NPHP4-205ENST00000466897 EGFLAMQ63HQ2 1017 aa15.49■□□□□ 0.07
NPHP4-205ENST00000466897 CWF19L1Q69YN2 538 aaKnown RBP15.49■□□□□ 0.07
NPHP4-205ENST00000466897 DRICH1Q6PGQ1 229 aaPredicted RBP15.49■□□□□ 0.07
NPHP4-205ENST00000466897 BMP8AQ7Z5Y6 402 aa15.49■□□□□ 0.07
NPHP4-205ENST00000466897 ZNF354CQ86Y25 554 aa15.49■□□□□ 0.07
NPHP4-205ENST00000466897 CREG2Q8IUH2 290 aa15.49■□□□□ 0.07
NPHP4-205ENST00000466897 SLC35B2Q8TB61 432 aa15.49■□□□□ 0.07
NPHP4-205ENST00000466897 TFB1MQ8WVM0 346 aaKnown RBP15.49■□□□□ 0.07
NPHP4-205ENST00000466897 ISG20Q96AZ6 181 aaKnown RBP15.49■□□□□ 0.07
NPHP4-205ENST00000466897 QKIQ96PU8 341 aaKnown RBP eCLIP15.49■□□□□ 0.076e-11■■■■□ 19.4
NPHP4-205ENST00000466897 GABRG3Q99928 467 aa15.49■□□□□ 0.07
NPHP4-205ENST00000466897 FOXQ1Q9C009 403 aa15.49■□□□□ 0.07
NPHP4-205ENST00000466897 MFSD1Q9H3U5 465 aa15.49■□□□□ 0.07
NPHP4-205ENST00000466897 SAE1Q9UBE0 346 aaPredicted RBP15.49■□□□□ 0.07
NPHP4-205ENST00000466897 UBA2Q9UBT2 640 aaPredicted RBP15.49■□□□□ 0.07
NPHP4-205ENST00000466897 AMACRQ9UHK6 382 aa15.49■□□□□ 0.07
NPHP4-205ENST00000466897 SLC8A2Q9UPR5 921 aa15.49■□□□□ 0.07
NPHP4-205ENST00000466897 SIT1Q9Y3P8 196 aa15.49■□□□□ 0.07
NPHP4-205ENST00000466897 MTF2Q9Y483 593 aaPredicted RBP15.49■□□□□ 0.07
NPHP4-205ENST00000466897 ESPNB1AK53 854 aa15.48■□□□□ 0.07
NPHP4-205ENST00000466897 J3KR12 359 aa15.48■□□□□ 0.07
NPHP4-205ENST00000466897 MCF2LO15068 1137 aa15.48■□□□□ 0.07
NPHP4-205ENST00000466897 MATN3O15232 486 aa15.48■□□□□ 0.07
NPHP4-205ENST00000466897 RNF40O75150 1001 aa15.48■□□□□ 0.07
NPHP4-205ENST00000466897 SRCP12931 536 aa15.48■□□□□ 0.07
NPHP4-205ENST00000466897 RENBPP51606 427 aa15.48■□□□□ 0.07
NPHP4-205ENST00000466897 CLCN5P51795 746 aa15.48■□□□□ 0.07
NPHP4-205ENST00000466897 IFI35P80217 286 aaPredicted RBP15.48■□□□□ 0.07
NPHP4-205ENST00000466897 TUBB2AQ13885 445 aa15.48■□□□□ 0.07
NPHP4-205ENST00000466897 CCNG2Q16589 344 aa15.48■□□□□ 0.07
NPHP4-205ENST00000466897 SLC45A4Q5BKX6 768 aa15.48■□□□□ 0.07
NPHP4-205ENST00000466897 ARHGAP36Q6ZRI8 547 aa15.48■□□□□ 0.07
NPHP4-205ENST00000466897 PLPP6Q8IY26 295 aa15.48■□□□□ 0.07
NPHP4-205ENST00000466897 CCDC13Q8IYE1 715 aa15.48■□□□□ 0.07
NPHP4-205ENST00000466897 TEX26Q8N6G2 289 aa15.48■□□□□ 0.07
NPHP4-205ENST00000466897 IL17RCQ8NAC3 791 aa15.48■□□□□ 0.07
NPHP4-205ENST00000466897 NETO2Q8NC67 525 aa15.48■□□□□ 0.07
NPHP4-205ENST00000466897 CYB5D2Q8WUJ1 264 aa15.48■□□□□ 0.07
NPHP4-205ENST00000466897 NSMCE1Q8WV22 266 aa15.48■□□□□ 0.07
NPHP4-205ENST00000466897 SORCS1Q8WY21 1168 aa15.48■□□□□ 0.07
NPHP4-205ENST00000466897 NKD2Q969F2 451 aaPredicted RBP15.48■□□□□ 0.07
NPHP4-205ENST00000466897 HAUS1Q96CS2 278 aa15.48■□□□□ 0.07
NPHP4-205ENST00000466897 LGMNQ99538 433 aa15.48■□□□□ 0.07
NPHP4-205ENST00000466897 TUBB2BQ9BVA1 445 aa15.48■□□□□ 0.07
NPHP4-205ENST00000466897 CHRDQ9H2X0 955 aa15.48■□□□□ 0.07
NPHP4-205ENST00000466897 LMAN1LQ9HAT1 526 aa15.48■□□□□ 0.07
NPHP4-205ENST00000466897 BCLAF3A2AJT9 711 aaKnown RBP15.47■□□□□ 0.07
NPHP4-205ENST00000466897 ZNF185O15231 689 aa15.47■□□□□ 0.07
NPHP4-205ENST00000466897 ATG13O75143 517 aa15.47■□□□□ 0.07
NPHP4-205ENST00000466897 MAP3K6O95382 1288 aa15.47■□□□□ 0.07
NPHP4-205ENST00000466897 MT-CO1P00395 513 aa15.47■□□□□ 0.07
NPHP4-205ENST00000466897 C7P10643 843 aa15.47■□□□□ 0.07
NPHP4-205ENST00000466897 RBP3P10745 1247 aa15.47■□□□□ 0.07
NPHP4-205ENST00000466897 AOC1P19801 751 aa15.47■□□□□ 0.07
NPHP4-205ENST00000466897 NTSR1P30989 418 aa15.47■□□□□ 0.07
NPHP4-205ENST00000466897 TIE1P35590 1138 aa15.47■□□□□ 0.07
NPHP4-205ENST00000466897 HSPA9P38646 679 aaKnown RBP15.47■□□□□ 0.07
NPHP4-205ENST00000466897 IL12RB1P42701 662 aa15.47■□□□□ 0.07
NPHP4-205ENST00000466897 STK19P49842 368 aaPredicted RBP15.47■□□□□ 0.07
NPHP4-205ENST00000466897 EIF3EP60228 445 aaKnown RBP15.47■□□□□ 0.07
NPHP4-205ENST00000466897 CYP1B1Q16678 543 aa15.47■□□□□ 0.07
NPHP4-205ENST00000466897 HNRNPA1L2Q32P51 320 aaKnown RBP15.47■□□□□ 0.07
NPHP4-205ENST00000466897 FNDC3BQ53EP0 1204 aaKnown RBP15.47■□□□□ 0.07
NPHP4-205ENST00000466897 SERPINA13PQ6UXR4 307 aa15.47■□□□□ 0.07
NPHP4-205ENST00000466897 LINGO4Q6UY18 593 aa15.47■□□□□ 0.07
NPHP4-205ENST00000466897 MAMSTRQ6ZN01 415 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms