RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 NDEL1Q9GZM8 345 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 CDH19Q9H159 772 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 KCNK1O00180 336 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 ETS2P15036 469 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 NOS2P35228 1153 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 GRIA4P48058 902 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 ARSHQ5FYA8 562 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 SLC27A1Q6PCB7 646 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 NPNTQ6UXI9 565 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 CDK5RAP1Q96SZ6 601 aaKnown RBP19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 MRPL57Q9BQC6 102 aaKnown RBP19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 DIABLOQ9NR28 239 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 UBIAD1Q9Y5Z9 338 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 NKRFO15226 690 aaKnown RBP eCLIP19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 RGS14O43566 566 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 YBX3P16989 372 aaKnown RBP eCLIP19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 HOXB6P17509 224 aaKnown RBP19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 EFCAB3Q8N7B9 438 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 SMARCD1Q96GM5 515 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 ZBTB45Q96K62 511 aaPredicted RBP19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 NDNQ99608 321 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 EMILIN2Q9BXX0 1053 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 ADPRHL2Q9NX46 363 aa19.28■□□□□ 0.68
CCDC88B-204ENST00000463837 CRHR1P34998 444 aa19.27■□□□□ 0.68
CCDC88B-204ENST00000463837 CDH8P55286 799 aa19.27■□□□□ 0.68
CCDC88B-204ENST00000463837 ATP13A4Q4VNC1 1196 aa19.27■□□□□ 0.68
CCDC88B-204ENST00000463837 NEPROQ6NW34 567 aa19.27■□□□□ 0.68
CCDC88B-204ENST00000463837 TNPO3Q9Y5L0 923 aaKnown RBP19.27■□□□□ 0.68
CCDC88B-204ENST00000463837 PDE9AO76083 593 aa19.27■□□□□ 0.68
CCDC88B-204ENST00000463837 GUCA1CO95843 209 aa19.27■□□□□ 0.68
CCDC88B-204ENST00000463837 ASS1P00966 412 aaKnown RBP19.27■□□□□ 0.68
CCDC88B-204ENST00000463837 PSMB4P28070 264 aa19.27■□□□□ 0.68
CCDC88B-204ENST00000463837 APOBEC3HQ6NTF7 200 aaKnown RBP19.27■□□□□ 0.68
CCDC88B-204ENST00000463837 MIB1Q86YT6 1006 aa19.27■□□□□ 0.68
CCDC88B-204ENST00000463837 CYP4Z2PQ8N1L4 340 aa19.27■□□□□ 0.68
CCDC88B-204ENST00000463837 METTL6Q8TCB7 284 aa19.27■□□□□ 0.68
CCDC88B-204ENST00000463837 DDX43Q9NXZ2 648 aaKnown RBP19.27■□□□□ 0.68
CCDC88B-204ENST00000463837 PLLPQ9Y342 182 aa19.27■□□□□ 0.68
CCDC88B-204ENST00000463837 FAM220BPB1ANY3 271 aa19.27■□□□□ 0.68
CCDC88B-204ENST00000463837 GRIA3P42263 894 aa19.27■□□□□ 0.68
CCDC88B-204ENST00000463837 PLK1P53350 603 aa19.27■□□□□ 0.68
CCDC88B-204ENST00000463837 ITGA1P56199 1179 aa19.27■□□□□ 0.68
CCDC88B-204ENST00000463837 RHBDL3P58872 404 aa19.27■□□□□ 0.68
CCDC88B-204ENST00000463837 ANGPT1Q15389 498 aa19.27■□□□□ 0.68
CCDC88B-204ENST00000463837 HDDC2Q7Z4H3 204 aa19.27■□□□□ 0.68
CCDC88B-204ENST00000463837 UTP15Q8TED0 518 aaKnown RBP19.27■□□□□ 0.68
CCDC88B-204ENST00000463837 WDR18Q9BV38 432 aa19.27■□□□□ 0.68
CCDC88B-204ENST00000463837 SLC4A5Q9BY07 1137 aa19.27■□□□□ 0.68
CCDC88B-204ENST00000463837 DGCR6LQ9BY27 220 aa19.27■□□□□ 0.68
CCDC88B-204ENST00000463837 LEF1Q9UJU2 399 aaPredicted RBP19.27■□□□□ 0.68
CCDC88B-204ENST00000463837 RAB26Q9ULW5 256 aa19.27■□□□□ 0.68
CCDC88B-204ENST00000463837 CLCA2Q9UQC9 943 aa19.27■□□□□ 0.68
CCDC88B-204ENST00000463837 LYPLA2O95372 231 aa19.27■□□□□ 0.67
CCDC88B-204ENST00000463837 TSNQ15631 228 aaKnown RBP19.27■□□□□ 0.67
CCDC88B-204ENST00000463837 NFE2Q16621 373 aaPredicted RBP19.27■□□□□ 0.67
CCDC88B-204ENST00000463837 UCMAQ8WVF2 138 aa19.27■□□□□ 0.67
CCDC88B-204ENST00000463837 WNT8BQ93098 351 aa19.27■□□□□ 0.67
CCDC88B-204ENST00000463837 RAD21L1Q9H4I0 556 aa19.27■□□□□ 0.67
CCDC88B-204ENST00000463837 NBNO60934 754 aa19.26■□□□□ 0.67
CCDC88B-204ENST00000463837 MTA2O94776 668 aa19.26■□□□□ 0.67
CCDC88B-204ENST00000463837 ABCG1P45844 678 aa19.26■□□□□ 0.67
CCDC88B-204ENST00000463837 DEFB132Q7Z7B7 95 aa19.26■□□□□ 0.67
CCDC88B-204ENST00000463837 HSFY1Q96LI6 401 aa19.26■□□□□ 0.67
CCDC88B-204ENST00000463837 A8MUI8 341 aa19.26■□□□□ 0.67
CCDC88B-204ENST00000463837 FGF10O15520 208 aaPredicted RBP19.26■□□□□ 0.67
CCDC88B-204ENST00000463837 GSSP48637 474 aa19.26■□□□□ 0.67
CCDC88B-204ENST00000463837 ALDH6A1Q02252 535 aaKnown RBP19.26■□□□□ 0.67
CCDC88B-204ENST00000463837 UNC5AQ6ZN44 842 aa19.26■□□□□ 0.67
CCDC88B-204ENST00000463837 C11orf96Q7Z7L8 435 aa19.26■□□□□ 0.67
CCDC88B-204ENST00000463837 REPS2Q8NFH8 660 aa19.26■□□□□ 0.67
CCDC88B-204ENST00000463837 SERPINB11Q96P15 392 aa19.26■□□□□ 0.67
CCDC88B-204ENST00000463837 OLFM1Q99784 485 aa19.26■□□□□ 0.67
CCDC88B-204ENST00000463837 SNRNP25Q9BV90 132 aaKnown RBP19.26■□□□□ 0.67
CCDC88B-204ENST00000463837 SLC17A7Q9P2U7 560 aa19.26■□□□□ 0.67
CCDC88B-204ENST00000463837 TMEM191CA6NGB0 347 aa19.26■□□□□ 0.67
CCDC88B-204ENST00000463837 ALOX12P18054 663 aa19.26■□□□□ 0.67
CCDC88B-204ENST00000463837 YY1P25490 414 aa19.26■□□□□ 0.67
CCDC88B-204ENST00000463837 MAGEA10P43363 369 aaPredicted RBP19.26■□□□□ 0.67
CCDC88B-204ENST00000463837 ECM1Q16610 540 aa19.26■□□□□ 0.67
CCDC88B-204ENST00000463837 OR7A2PQ8NGA2 310 aa19.26■□□□□ 0.67
CCDC88B-204ENST00000463837 ACE2Q9BYF1 805 aaPredicted RBP19.26■□□□□ 0.67
CCDC88B-204ENST00000463837 KLHL20Q9Y2M5 609 aa19.26■□□□□ 0.67
CCDC88B-204ENST00000463837 NFASCO94856 1347 aa19.26■□□□□ 0.67
CCDC88B-204ENST00000463837 KCNH1O95259 989 aa19.26■□□□□ 0.67
CCDC88B-204ENST00000463837 EIF2S1P05198 315 aaKnown RBP19.26■□□□□ 0.67
CCDC88B-204ENST00000463837 CDC16Q13042 620 aa19.26■□□□□ 0.67
CCDC88B-204ENST00000463837 PDZK1Q5T2W1 519 aa19.26■□□□□ 0.67
CCDC88B-204ENST00000463837 ADGRD1Q6QNK2 874 aa19.26■□□□□ 0.67
CCDC88B-204ENST00000463837 OR52K1Q8NGK4 314 aa19.26■□□□□ 0.67
CCDC88B-204ENST00000463837 MARK4Q96L34 752 aa19.26■□□□□ 0.67
CCDC88B-204ENST00000463837 COQ7Q99807 217 aa19.26■□□□□ 0.67
CCDC88B-204ENST00000463837 SNTG2Q9NY99 539 aa19.26■□□□□ 0.67
CCDC88B-204ENST00000463837 HBS1LQ9Y450 684 aaKnown RBP19.26■□□□□ 0.67
CCDC88B-204ENST00000463837 MST1RQ04912 1400 aa19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 PRR5-ARHGAP8B1AHC4 643 aa19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 ADCY6O43306 1168 aa19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 USP12O75317 370 aa19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 RHOCP08134 193 aa19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 ARHGAP8P85298 464 aa19.25■□□□□ 0.67
CCDC88B-204ENST00000463837 TRIQKQ629K1 86 aa19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms