RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 HSP90AB4PQ58FF6 505 aa4.33□□□□□ -1.72
USP40-209ENST00000452724 AADACL2Q6P093 401 aa4.33□□□□□ -1.72
USP40-209ENST00000452724 KDELC2Q7Z4H8 507 aa4.33□□□□□ -1.72
USP40-209ENST00000452724 ZSCAN2Q7Z7L9 614 aaPredicted RBP4.33□□□□□ -1.72
USP40-209ENST00000452724 IGFN1Q86VF2 1251 aa4.33□□□□□ -1.72
USP40-209ENST00000452724 CERS3Q8IU89 383 aa4.33□□□□□ -1.72
USP40-209ENST00000452724 SCAIQ8N9R8 606 aa4.33□□□□□ -1.72
USP40-209ENST00000452724 MPLKIPQ8TAP9 179 aa4.33□□□□□ -1.72
USP40-209ENST00000452724 NCSTNQ92542 709 aa4.33□□□□□ -1.72
USP40-209ENST00000452724 MSI2Q96DH6 328 aaKnown RBP4.33□□□□□ -1.72
USP40-209ENST00000452724 MAELQ96JY0 434 aaKnown RBP4.33□□□□□ -1.72
USP40-209ENST00000452724 IFT27Q9BW83 186 aa4.33□□□□□ -1.72
USP40-209ENST00000452724 ACTR5Q9H9F9 607 aaPredicted RBP4.33□□□□□ -1.72
USP40-209ENST00000452724 TMEM160Q9NX00 188 aa4.33□□□□□ -1.72
USP40-209ENST00000452724 GTF2A1LQ9UNN4 478 aa4.33□□□□□ -1.72
USP40-209ENST00000452724 SQORQ9Y6N5 450 aa4.33□□□□□ -1.72
USP40-209ENST00000452724 IGKV2D-30A0A075B6S6 120 aa4.32□□□□□ -1.72
USP40-209ENST00000452724 A0A1W2PPC1 479 aa4.32□□□□□ -1.72
USP40-209ENST00000452724 CCDC189A1A4V9 331 aa4.32□□□□□ -1.72
USP40-209ENST00000452724 ZNF814B7Z6K7 855 aa4.32□□□□□ -1.72
USP40-209ENST00000452724 STRNO43815 780 aa4.32□□□□□ -1.72
USP40-209ENST00000452724 HBP1O60381 514 aa4.32□□□□□ -1.72
USP40-209ENST00000452724 PYGLP06737 847 aa4.32□□□□□ -1.72
USP40-209ENST00000452724 CCKBRP32239 447 aa4.32□□□□□ -1.72
USP40-209ENST00000452724 HNF1BP35680 557 aa4.32□□□□□ -1.72
USP40-209ENST00000452724 GJC1P36383 396 aa4.32□□□□□ -1.72
USP40-209ENST00000452724 SKIV2L2P42285 1042 aaKnown RBP4.32□□□□□ -1.72
USP40-209ENST00000452724 MTNR1AP48039 350 aa4.32□□□□□ -1.72
USP40-209ENST00000452724 GAD2Q05329 585 aa4.32□□□□□ -1.72
USP40-209ENST00000452724 IL13RA2Q14627 380 aa4.32□□□□□ -1.72
USP40-209ENST00000452724 INPP5JQ15735 1006 aaPredicted RBP4.32□□□□□ -1.72
USP40-209ENST00000452724 WDR45BQ5MNZ6 344 aa4.32□□□□□ -1.72
USP40-209ENST00000452724 ENTPD8Q5MY95 495 aa4.32□□□□□ -1.72
USP40-209ENST00000452724 SH2D4BQ5SQS7 431 aa4.32□□□□□ -1.72
USP40-209ENST00000452724 TTLL5Q6EMB2 1281 aa4.32□□□□□ -1.72
USP40-209ENST00000452724 HMBOX1Q6NT76 420 aa4.32□□□□□ -1.72
USP40-209ENST00000452724 AAGABQ6PD74 315 aa4.32□□□□□ -1.72
USP40-209ENST00000452724 CRELD2Q6UXH1 353 aaPredicted RBP4.32□□□□□ -1.72
USP40-209ENST00000452724 SLC25A41Q8N5S1 370 aa4.32□□□□□ -1.72
USP40-209ENST00000452724 CENPIQ92674 756 aaPredicted RBP4.32□□□□□ -1.72
USP40-209ENST00000452724 FRG2BQ96QU4 278 aa4.32□□□□□ -1.72
USP40-209ENST00000452724 NPLQ9BXD5 320 aaPredicted RBP4.32□□□□□ -1.72
USP40-209ENST00000452724 HIPK3Q9H422 1215 aa4.32□□□□□ -1.72
USP40-209ENST00000452724 GGA3Q9NZ52 723 aa4.32□□□□□ -1.72
USP40-209ENST00000452724 HDAC6Q9UBN7 1215 aa4.32□□□□□ -1.72
USP40-209ENST00000452724 GJD2Q9UKL4 321 aa4.32□□□□□ -1.72
USP40-209ENST00000452724 COG5Q9UP83 839 aa4.32□□□□□ -1.72
USP40-209ENST00000452724 DHDHQ9UQ10 334 aa4.32□□□□□ -1.72
USP40-209ENST00000452724 OSGIN2Q9Y236 505 aa4.32□□□□□ -1.72
USP40-209ENST00000452724 C11orf97A0A1B0GVM6 126 aaPredicted RBP4.31□□□□□ -1.72
USP40-209ENST00000452724 CD8B2A6NJW9 211 aa4.31□□□□□ -1.72
USP40-209ENST00000452724 SH2D7A6NKC9 451 aaPredicted RBP4.31□□□□□ -1.72
USP40-209ENST00000452724 A6NNC1 897 aa4.31□□□□□ -1.72
USP40-209ENST00000452724 DDAH2O95865 285 aa4.31□□□□□ -1.72
USP40-209ENST00000452724 PRKCHP24723 683 aa4.31□□□□□ -1.72
USP40-209ENST00000452724 CCKARP32238 428 aa4.31□□□□□ -1.72
USP40-209ENST00000452724 SLC16A2P36021 539 aa4.31□□□□□ -1.72
USP40-209ENST00000452724 VAMP2P63027 116 aa4.31□□□□□ -1.72
USP40-209ENST00000452724 KHDRBS1Q07666 443 aaKnown RBP eCLIP4.31□□□□□ -1.72
USP40-209ENST00000452724 TBL3Q12788 808 aaKnown RBP4.31□□□□□ -1.72
USP40-209ENST00000452724 TRPC3Q13507 836 aa4.31□□□□□ -1.72
USP40-209ENST00000452724 ASPHD1Q5U4P2 390 aa4.31□□□□□ -1.72
USP40-209ENST00000452724 TMEM268Q5VZI3 342 aa4.31□□□□□ -1.72
USP40-209ENST00000452724 RUSC1-AS1Q66K80 236 aa4.31□□□□□ -1.72
USP40-209ENST00000452724 GJB7Q6PEY0 223 aa4.31□□□□□ -1.72
USP40-209ENST00000452724 LVRNQ6Q4G3 990 aa4.31□□□□□ -1.72
USP40-209ENST00000452724 FAR1Q8WVX9 515 aa4.31□□□□□ -1.72
USP40-209ENST00000452724 SH3KBP1Q96B97 665 aa4.31□□□□□ -1.72
USP40-209ENST00000452724 TEFMQ96QE5 360 aaKnown RBP4.31□□□□□ -1.72
USP40-209ENST00000452724 GPR63Q9BZJ6 419 aa4.31□□□□□ -1.72
USP40-209ENST00000452724 TAOK3Q9H2K8 898 aa4.31□□□□□ -1.72
USP40-209ENST00000452724 MROH8Q9H579 483 aa4.31□□□□□ -1.72
USP40-209ENST00000452724 TTC12Q9H892 705 aaPredicted RBP4.31□□□□□ -1.72
USP40-209ENST00000452724 SEMA4BQ9NPR2 832 aaPredicted RBP4.31□□□□□ -1.72
USP40-209ENST00000452724 DECR2Q9NUI1 292 aa4.31□□□□□ -1.72
USP40-209ENST00000452724 ZDHHC7Q9NXF8 308 aa4.31□□□□□ -1.72
USP40-209ENST00000452724 WWOXQ9NZC7 414 aa4.31□□□□□ -1.72
USP40-209ENST00000452724 ZNF580Q9UK33 172 aa4.31□□□□□ -1.72
USP40-209ENST00000452724 PCDHA12Q9UN75 941 aa4.31□□□□□ -1.72
USP40-209ENST00000452724 ICKQ9UPZ9 632 aa4.31□□□□□ -1.72
USP40-209ENST00000452724 TRBV5-7A0A0A0MS05 114 aa4.3□□□□□ -1.72
USP40-209ENST00000452724 OR6C68A6NDL8 312 aa4.3□□□□□ -1.72
USP40-209ENST00000452724 FAM90A7PA6NKC0 464 aa4.3□□□□□ -1.72
USP40-209ENST00000452724 FAM90A22PA8MWA6 464 aa4.3□□□□□ -1.72
USP40-209ENST00000452724 FAM90A12PA8MX19 464 aa4.3□□□□□ -1.72
USP40-209ENST00000452724 FAM90A23PA8MXZ1 464 aa4.3□□□□□ -1.72
USP40-209ENST00000452724 HOXC11O43248 304 aaPredicted RBP4.3□□□□□ -1.72
USP40-209ENST00000452724 ATG13O75143 517 aa4.3□□□□□ -1.72
USP40-209ENST00000452724 NDUFB8O95169 186 aa4.3□□□□□ -1.72
USP40-209ENST00000452724 CBX6O95503 412 aa4.3□□□□□ -1.72
USP40-209ENST00000452724 CRYABP02511 175 aaKnown RBP4.3□□□□□ -1.72
USP40-209ENST00000452724 CHRNB1P11230 501 aa4.3□□□□□ -1.72
USP40-209ENST00000452724 PSG1P11464 419 aa4.3□□□□□ -1.72
USP40-209ENST00000452724 ALDH7A1P49419 539 aaKnown RBP4.3□□□□□ -1.72
USP40-209ENST00000452724 LINC00205P59089 165 aa4.3□□□□□ -1.72
USP40-209ENST00000452724 KLHL22Q53GT1 634 aa4.3□□□□□ -1.72
USP40-209ENST00000452724 COLCA1Q6ZS62 124 aa4.3□□□□□ -1.72
USP40-209ENST00000452724 TMTC1Q8IUR5 882 aa4.3□□□□□ -1.72
USP40-209ENST00000452724 FAM185AQ8N0U4 392 aa4.3□□□□□ -1.72
USP40-209ENST00000452724 MMP21Q8N119 569 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms