RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 CCINQ13939 588 aa16.1■□□□□ 0.17
USP40-206ENST00000443711 LRRC32Q14392 662 aa16.1■□□□□ 0.17
USP40-206ENST00000443711 UBXN2BQ14CS0 331 aa16.1■□□□□ 0.17
USP40-206ENST00000443711 SIX1Q15475 284 aaPredicted RBP16.1■□□□□ 0.17
USP40-206ENST00000443711 CCNG2Q16589 344 aa16.1■□□□□ 0.17
USP40-206ENST00000443711 LINGO4Q6UY18 593 aa16.1■□□□□ 0.17
USP40-206ENST00000443711 METTL3Q86U44 580 aaKnown RBP16.1■□□□□ 0.17
USP40-206ENST00000443711 CDKL3Q8IVW4 592 aaPredicted RBP16.1■□□□□ 0.17
USP40-206ENST00000443711 CCDC13Q8IYE1 715 aa16.1■□□□□ 0.17
USP40-206ENST00000443711 SYNPOQ8N3V7 929 aa16.1■□□□□ 0.17
USP40-206ENST00000443711 KDM1BQ8NB78 822 aa16.1■□□□□ 0.17
USP40-206ENST00000443711 CYB5D2Q8WUJ1 264 aa16.1■□□□□ 0.17
USP40-206ENST00000443711 C1orf54Q8WWF1 131 aa16.1■□□□□ 0.17
USP40-206ENST00000443711 CASKIN2Q8WXE0 1202 aa16.1■□□□□ 0.17
USP40-206ENST00000443711 FATE1Q969F0 183 aa16.1■□□□□ 0.17
USP40-206ENST00000443711 RPL10LQ96L21 214 aaKnown RBP16.1■□□□□ 0.17
USP40-206ENST00000443711 ZNF599Q96NL3 588 aa16.1■□□□□ 0.17
USP40-206ENST00000443711 LGMNQ99538 433 aa16.1■□□□□ 0.17
USP40-206ENST00000443711 OSBPL6Q9BZF3 934 aa16.1■□□□□ 0.17
USP40-206ENST00000443711 SMARCAL1Q9NZC9 954 aa16.1■□□□□ 0.17
USP40-206ENST00000443711 THAP10Q9P2Z0 257 aaPredicted RBP16.1■□□□□ 0.17
USP40-206ENST00000443711 UBA2Q9UBT2 640 aaPredicted RBP16.1■□□□□ 0.17
USP40-206ENST00000443711 CDC23Q9UJX2 597 aa16.1■□□□□ 0.17
USP40-206ENST00000443711 SLC8A2Q9UPR5 921 aa16.1■□□□□ 0.17
USP40-206ENST00000443711 BDP1A6H8Y1 2624 aa16.09■□□□□ 0.17
USP40-206ENST00000443711 GOLGA6L10A0A0M3HER8 536 aa16.09■□□□□ 0.17
USP40-206ENST00000443711 MATN3O15232 486 aa16.09■□□□□ 0.17
USP40-206ENST00000443711 MTSS1O43312 755 aa16.09■□□□□ 0.17
USP40-206ENST00000443711 TARSP26639 723 aaKnown RBP16.09■□□□□ 0.17
USP40-206ENST00000443711 KIR2DL1P43626 348 aaPredicted RBP16.09■□□□□ 0.17
USP40-206ENST00000443711 SEC13P55735 322 aa16.09■□□□□ 0.17
USP40-206ENST00000443711 RFTN1Q14699 578 aaPredicted RBP16.09■□□□□ 0.17
USP40-206ENST00000443711 PRKD1Q15139 912 aaPredicted RBP16.09■□□□□ 0.17
USP40-206ENST00000443711 FNDC3BQ53EP0 1204 aaKnown RBP16.09■□□□□ 0.17
USP40-206ENST00000443711 INO80DQ53TQ3 878 aaPredicted RBP16.09■□□□□ 0.17
USP40-206ENST00000443711 SLC45A4Q5BKX6 768 aa16.09■□□□□ 0.17
USP40-206ENST00000443711 TMCO4Q5TGY1 634 aa16.09■□□□□ 0.17
USP40-206ENST00000443711 EMC10Q5UCC4 262 aa16.09■□□□□ 0.17
USP40-206ENST00000443711 EGFLAMQ63HQ2 1017 aa16.09■□□□□ 0.17
USP40-206ENST00000443711 DARS2Q6PI48 645 aaKnown RBP16.09■□□□□ 0.17
USP40-206ENST00000443711 LEKR1Q6ZMV7 388 aa16.09■□□□□ 0.17
USP40-206ENST00000443711 TRIM67Q6ZTA4 783 aa16.09■□□□□ 0.17
USP40-206ENST00000443711 ZNF687Q8N1G0 1237 aa16.09■□□□□ 0.17
USP40-206ENST00000443711 ZNF513Q8N8E2 541 aaPredicted RBP16.09■□□□□ 0.17
USP40-206ENST00000443711 ATP11CQ8NB49 1132 aa16.09■□□□□ 0.17
USP40-206ENST00000443711 SLC35B2Q8TB61 432 aa16.09■□□□□ 0.17
USP40-206ENST00000443711 MRGPRX3Q96LB0 322 aa16.09■□□□□ 0.17
USP40-206ENST00000443711 QKIQ96PU8 341 aaKnown RBP eCLIP16.09■□□□□ 0.17
USP40-206ENST00000443711 FAM118BQ9BPY3 351 aa16.09■□□□□ 0.17
USP40-206ENST00000443711 FERMT1Q9BQL6 677 aa16.09■□□□□ 0.17
USP40-206ENST00000443711 AP1M1Q9BXS5 423 aa16.09■□□□□ 0.17
USP40-206ENST00000443711 MFSD1Q9H3U5 465 aa16.09■□□□□ 0.17
USP40-206ENST00000443711 LMAN1LQ9HAT1 526 aa16.09■□□□□ 0.17
USP40-206ENST00000443711 PDFQ9HBH1 243 aa16.09■□□□□ 0.17
USP40-206ENST00000443711 SLCO3A1Q9UIG8 710 aa16.09■□□□□ 0.17
USP40-206ENST00000443711 HS3ST2Q9Y278 367 aa16.09■□□□□ 0.17
USP40-206ENST00000443711 LIASO43766 372 aa16.08■□□□□ 0.16
USP40-206ENST00000443711 CD160O95971 181 aa16.08■□□□□ 0.16
USP40-206ENST00000443711 MT-CO1P00395 513 aa16.08■□□□□ 0.16
USP40-206ENST00000443711 CHRNB1P11230 501 aa16.08■□□□□ 0.16
USP40-206ENST00000443711 SRCP12931 536 aa16.08■□□□□ 0.16
USP40-206ENST00000443711 TIE1P35590 1138 aa16.08■□□□□ 0.16
USP40-206ENST00000443711 STK19P49842 368 aaPredicted RBP16.08■□□□□ 0.16
USP40-206ENST00000443711 SERPINH1P50454 418 aaKnown RBP16.08■□□□□ 0.16
USP40-206ENST00000443711 RENBPP51606 427 aa16.08■□□□□ 0.16
USP40-206ENST00000443711 CLCN6P51797 869 aa16.08■□□□□ 0.16
USP40-206ENST00000443711 BYSLQ13895 437 aaKnown RBP16.08■□□□□ 0.16
USP40-206ENST00000443711 HNRNPDQ14103 355 aaKnown RBP16.08■□□□□ 0.16
USP40-206ENST00000443711 ZNF234Q14588 700 aa16.08■□□□□ 0.16
USP40-206ENST00000443711 LBRQ14739 615 aaKnown RBP16.08■□□□□ 0.16
USP40-206ENST00000443711 PTPRNQ16849 979 aa16.08■□□□□ 0.16
USP40-206ENST00000443711 DNTTIP2Q5QJE6 756 aaKnown RBP16.08■□□□□ 0.16
USP40-206ENST00000443711 MARC1Q5VT66 337 aa16.08■□□□□ 0.16
USP40-206ENST00000443711 SDE2Q6IQ49 451 aa16.08■□□□□ 0.16
USP40-206ENST00000443711 DRICH1Q6PGQ1 229 aaPredicted RBP16.08■□□□□ 0.16
USP40-206ENST00000443711 TRMT11Q7Z4G4 463 aaKnown RBP16.08■□□□□ 0.16
USP40-206ENST00000443711 BBS5Q8N3I7 341 aa16.08■□□□□ 0.16
USP40-206ENST00000443711 SH2D3CQ8N5H7 860 aa16.08■□□□□ 0.16
USP40-206ENST00000443711 PRELID2Q8N945 189 aa16.08■□□□□ 0.16
USP40-206ENST00000443711 USP33Q8TEY7 942 aa16.08■□□□□ 0.16
USP40-206ENST00000443711 LRRN4Q8WUT4 740 aa16.08■□□□□ 0.16
USP40-206ENST00000443711 ATG4AQ8WYN0 398 aa16.08■□□□□ 0.16
USP40-206ENST00000443711 NKD2Q969F2 451 aaPredicted RBP16.08■□□□□ 0.16
USP40-206ENST00000443711 FOXQ1Q9C009 403 aa16.08■□□□□ 0.16
USP40-206ENST00000443711 HCN2Q9UL51 889 aa16.08■□□□□ 0.16
USP40-206ENST00000443711 DNPEPQ9ULA0 475 aa16.08■□□□□ 0.16
USP40-206ENST00000443711 DRG1Q9Y295 367 aaKnown RBP16.08■□□□□ 0.16
USP40-206ENST00000443711 MTF2Q9Y483 593 aaPredicted RBP16.08■□□□□ 0.16
USP40-206ENST00000443711 BCLAF3A2AJT9 711 aaKnown RBP16.07■□□□□ 0.16
USP40-206ENST00000443711 CFAP69A5D8W1 941 aa16.07■□□□□ 0.16
USP40-206ENST00000443711 ATP9BO43861 1147 aa16.07■□□□□ 0.16
USP40-206ENST00000443711 RNF40O75150 1001 aa16.07■□□□□ 0.16
USP40-206ENST00000443711 NEBLO76041 1014 aa16.07■□□□□ 0.16
USP40-206ENST00000443711 PEX11BO96011 259 aa16.07■□□□□ 0.16
USP40-206ENST00000443711 CCNB1P14635 433 aa16.07■□□□□ 0.16
USP40-206ENST00000443711 NTSR1P30989 418 aa16.07■□□□□ 0.16
USP40-206ENST00000443711 IFI35P80217 286 aaPredicted RBP16.07■□□□□ 0.16
USP40-206ENST00000443711 CKAP4Q07065 602 aaKnown RBP16.07■□□□□ 0.16
USP40-206ENST00000443711 SNX1Q13596 522 aa16.07■□□□□ 0.16
USP40-206ENST00000443711 DLG2Q15700 870 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms