RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 FBXW8Q8N3Y1 598 aa12.02□□□□□ -0.49
CD44-209ENST00000433892 SPDYE1Q8NFV5 336 aaPredicted RBP12.02□□□□□ -0.49
CD44-209ENST00000433892 USP33Q8TEY7 942 aa12.02□□□□□ -0.49
CD44-209ENST00000433892 ZC3H15Q8WU90 426 aaKnown RBP12.02□□□□□ -0.49
CD44-209ENST00000433892 SREK1Q8WXA9 508 aaKnown RBP12.02□□□□□ -0.49
CD44-209ENST00000433892 TEKT5Q96M29 485 aa12.02□□□□□ -0.49
CD44-209ENST00000433892 NR1H4Q96RI1 486 aaPredicted RBP12.02□□□□□ -0.49
CD44-209ENST00000433892 TUBGCP5Q96RT8 1024 aa12.02□□□□□ -0.49
CD44-209ENST00000433892 TSPAN18Q96SJ8 248 aa12.02□□□□□ -0.49
CD44-209ENST00000433892 ACE2Q9BYF1 805 aaPredicted RBP12.02□□□□□ -0.49
CD44-209ENST00000433892 ILKAPQ9H0C8 392 aaPredicted RBP12.02□□□□□ -0.49
CD44-209ENST00000433892 TSPYL2Q9H2G4 693 aaPredicted RBP12.02□□□□□ -0.49
CD44-209ENST00000433892 EBF3Q9H4W6 596 aa12.02□□□□□ -0.49
CD44-209ENST00000433892 CNGB3Q9NQW8 809 aa12.02□□□□□ -0.49
CD44-209ENST00000433892 OXSMQ9NWU1 459 aa12.02□□□□□ -0.49
CD44-209ENST00000433892 PACSIN3Q9UKS6 424 aa12.02□□□□□ -0.49
CD44-209ENST00000433892 G3BP2Q9UN86 482 aaKnown RBP12.02□□□□□ -0.49
CD44-209ENST00000433892 SSX2IPQ9Y2D8 614 aa12.02□□□□□ -0.49
CD44-209ENST00000433892 C9IYK1 514 aa12.02□□□□□ -0.49
CD44-209ENST00000433892 MTSS1O43312 755 aa12.02□□□□□ -0.49
CD44-209ENST00000433892 EPHA3P29320 983 aa12.02□□□□□ -0.49
CD44-209ENST00000433892 CRYBB1P53674 252 aaPredicted RBP12.02□□□□□ -0.49
CD44-209ENST00000433892 CSE1LP55060 971 aaKnown RBP12.02□□□□□ -0.49
CD44-209ENST00000433892 GJA9P57773 515 aa12.02□□□□□ -0.49
CD44-209ENST00000433892 FRG1Q14331 258 aaKnown RBP12.02□□□□□ -0.49
CD44-209ENST00000433892 OLFML2BQ68BL8 750 aa12.02□□□□□ -0.49
CD44-209ENST00000433892 TLK2Q86UE8 772 aa12.02□□□□□ -0.49
CD44-209ENST00000433892 SPATA22Q8NHS9 363 aa12.02□□□□□ -0.49
CD44-209ENST00000433892 EPAS1Q99814 870 aa12.02□□□□□ -0.49
CD44-209ENST00000433892 MCMBPQ9BTE3 642 aa12.02□□□□□ -0.49
CD44-209ENST00000433892 TLK1Q9UKI8 766 aa12.02□□□□□ -0.49
CD44-209ENST00000433892 GNEQ9Y223 722 aaKnown RBP12.02□□□□□ -0.49
CD44-209ENST00000433892 EME2A4GXA9 379 aaPredicted RBP12.01□□□□□ -0.49
CD44-209ENST00000433892 AIM2O14862 343 aa12.01□□□□□ -0.49
CD44-209ENST00000433892 RNASEH1O60930 286 aaKnown RBP12.01□□□□□ -0.49
CD44-209ENST00000433892 CAPN15O75808 1086 aa12.01□□□□□ -0.49
CD44-209ENST00000433892 SRGAP2BP0DMP2 458 aa12.01□□□□□ -0.49
CD44-209ENST00000433892 GLDCP23378 1020 aa12.01□□□□□ -0.49
CD44-209ENST00000433892 PEX2P28328 305 aa12.01□□□□□ -0.49
CD44-209ENST00000433892 GRIA4P48058 902 aa12.01□□□□□ -0.49
CD44-209ENST00000433892 PSEN2P49810 448 aa12.01□□□□□ -0.49
CD44-209ENST00000433892 CLCNKBP51801 687 aa12.01□□□□□ -0.49
CD44-209ENST00000433892 IRX1P78414 480 aaPredicted RBP12.01□□□□□ -0.49
CD44-209ENST00000433892 BEX3Q00994 111 aa12.01□□□□□ -0.49
CD44-209ENST00000433892 CDH17Q12864 832 aa12.01□□□□□ -0.49
CD44-209ENST00000433892 USP10Q14694 798 aaKnown RBP12.01□□□□□ -0.49
CD44-209ENST00000433892 ANO4Q32M45 955 aa12.01□□□□□ -0.49
CD44-209ENST00000433892 SFT2D3Q587I9 215 aa12.01□□□□□ -0.49
CD44-209ENST00000433892 PPM1LQ5SGD2 360 aa12.01□□□□□ -0.49
CD44-209ENST00000433892 C9orf131Q5VYM1 1079 aa12.01□□□□□ -0.49
CD44-209ENST00000433892 PDSS2Q86YH6 399 aa12.01□□□□□ -0.49
CD44-209ENST00000433892 TMEM151AQ8N4L1 468 aa12.01□□□□□ -0.49
CD44-209ENST00000433892 CNTD1Q8N815 330 aa12.01□□□□□ -0.49
CD44-209ENST00000433892 ZSCAN18Q8TBC5 510 aaPredicted RBP12.01□□□□□ -0.49
CD44-209ENST00000433892 PGAP3Q96FM1 320 aaPredicted RBP12.01□□□□□ -0.49
CD44-209ENST00000433892 BRD8Q9H0E9 1235 aa12.01□□□□□ -0.49
CD44-209ENST00000433892 MRPL42Q9Y6G3 142 aaKnown RBP12.01□□□□□ -0.49
CD44-209ENST00000433892 MATN2O00339 956 aa12□□□□□ -0.49
CD44-209ENST00000433892 MYL3P08590 195 aa12□□□□□ -0.49
CD44-209ENST00000433892 SBK3P0C264 359 aa12□□□□□ -0.49
CD44-209ENST00000433892 RAG1P15918 1043 aa12□□□□□ -0.49
CD44-209ENST00000433892 NUDT2P50583 147 aa12□□□□□ -0.49
CD44-209ENST00000433892 NAGLUP54802 743 aa12□□□□□ -0.49
CD44-209ENST00000433892 MTTPP55157 894 aa12□□□□□ -0.49
CD44-209ENST00000433892 ARL13AQ5H913 290 aaPredicted RBP12□□□□□ -0.49
CD44-209ENST00000433892 INTS6LQ5JSJ4 861 aaKnown RBP12□□□□□ -0.49
CD44-209ENST00000433892 RAB41Q5JT25 222 aa12□□□□□ -0.49
CD44-209ENST00000433892 METTL21CQ5VZV1 264 aa12□□□□□ -0.49
CD44-209ENST00000433892 RWDD4Q6NW29 188 aaKnown RBP12□□□□□ -0.49
CD44-209ENST00000433892 ARHGAP36Q6ZRI8 547 aa12□□□□□ -0.49
CD44-209ENST00000433892 BHLHA9Q7RTU4 235 aa12□□□□□ -0.49
CD44-209ENST00000433892 ZC3HC1Q86WB0 502 aaKnown RBP12□□□□□ -0.49
CD44-209ENST00000433892 C3orf58Q8NDZ4 430 aa12□□□□□ -0.49
CD44-209ENST00000433892 GDPD5Q8WTR4 605 aa12□□□□□ -0.49
CD44-209ENST00000433892 KCTD4Q8WVF5 259 aa12□□□□□ -0.49
CD44-209ENST00000433892 JADE3Q92613 823 aa12□□□□□ -0.49
CD44-209ENST00000433892 RNF34Q969K3 372 aa12□□□□□ -0.49
CD44-209ENST00000433892 PPP2R3CQ969Q6 453 aa12□□□□□ -0.49
CD44-209ENST00000433892 SCYL1Q96KG9 808 aa12□□□□□ -0.49
CD44-209ENST00000433892 GAD1Q99259 594 aa12□□□□□ -0.49
CD44-209ENST00000433892 GPR22Q99680 433 aa12□□□□□ -0.49
CD44-209ENST00000433892 RTKNQ9BST9 563 aa12□□□□□ -0.49
CD44-209ENST00000433892 C1QTNF1Q9BXJ1 281 aa12□□□□□ -0.49
CD44-209ENST00000433892 NUF2Q9BZD4 464 aa12□□□□□ -0.49
CD44-209ENST00000433892 RUVBL2Q9Y230 463 aaKnown RBP12□□□□□ -0.49
CD44-209ENST00000433892 HHLA1C9JL84 531 aa12□□□□□ -0.49
CD44-209ENST00000433892 DFFAO00273 331 aa12□□□□□ -0.49
CD44-209ENST00000433892 HDAC3O15379 428 aa12□□□□□ -0.49
CD44-209ENST00000433892 H2AFYO75367 372 aaKnown RBP12□□□□□ -0.49
CD44-209ENST00000433892 ZNF189O75820 626 aaPredicted RBP12□□□□□ -0.49
CD44-209ENST00000433892 PIGNO95427 931 aa12□□□□□ -0.49
CD44-209ENST00000433892 MT-CYBP00156 380 aaPredicted RBP12□□□□□ -0.49
CD44-209ENST00000433892 AHSGP02765 367 aa12□□□□□ -0.49
CD44-209ENST00000433892 FESP07332 822 aa12□□□□□ -0.49
CD44-209ENST00000433892 GNAT1P11488 350 aa12□□□□□ -0.49
CD44-209ENST00000433892 GABRB3P28472 473 aa12□□□□□ -0.49
CD44-209ENST00000433892 PRDX6P30041 224 aa12□□□□□ -0.49
CD44-209ENST00000433892 LHX1P48742 406 aa12□□□□□ -0.49
CD44-209ENST00000433892 CXCR3P49682 368 aa12□□□□□ -0.49
CD44-209ENST00000433892 AQP4P55087 323 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms