RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 SNTG2Q9NY99 539 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 KLF15Q9UIH9 416 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 LINC00854A0A1B0GVQ3 168 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 CCT8L1PA6NM43 557 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 ASNA1O43681 348 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 FKTNO75072 461 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 ATP5F1P24539 256 aaPredicted RBP6.95□□□□□ -1.3
SCN1A-204ENST00000423058 MYL9P24844 172 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 FAUP35544 74 aaKnown RBP6.95□□□□□ -1.3
SCN1A-204ENST00000423058 HECTD3Q5T447 861 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 ZBTB49Q6ZSB9 765 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 SLC4A11Q8NBS3 891 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 FERD3LQ96RJ6 166 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 TMEM79Q9BSE2 394 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 C9orf16Q9BUW7 83 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 RUSC1Q9BVN2 902 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 ROGDIQ9GZN7 287 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 ZMYM5Q9UJ78 669 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 APODP05090 189 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 SLC1A6P48664 564 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 FRG1Q14331 258 aaKnown RBP6.95□□□□□ -1.3
SCN1A-204ENST00000423058 ZCWPW2Q504Y3 356 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 DAW1Q8N136 415 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 C6orf62Q9GZU0 229 aaPredicted RBP6.95□□□□□ -1.3
SCN1A-204ENST00000423058 AGO4Q9HCK5 861 aaKnown RBP6.95□□□□□ -1.3
SCN1A-204ENST00000423058 MARCH2Q9P0N8 246 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 PCDHA3Q9Y5H8 950 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 ATMINO43313 823 aaPredicted RBP6.95□□□□□ -1.3
SCN1A-204ENST00000423058 FKBP6O75344 327 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 MLYCDO95822 493 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 SLC35G4P0C7Q5 338 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 ADORA2AP29274 412 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 TRAF3Q13114 568 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 DGUOKQ16854 277 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 SAMD4BQ5PRF9 694 aaKnown RBP6.95□□□□□ -1.3
SCN1A-204ENST00000423058 HYIQ5T013 277 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 FAXCQ5TGI0 409 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 ZDHHC20Q5W0Z9 365 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 PLEKHA7Q6IQ23 1121 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 FBXO36Q8NEA4 188 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 CD101Q93033 1021 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 SHCBP1LQ9BZQ2 653 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 XRN2Q9H0D6 950 aaKnown RBP eCLIP6.95□□□□□ -1.3
SCN1A-204ENST00000423058 MID1IP1Q9NPA3 183 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 LIMD1Q9UGP4 676 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 NRCAMQ92823 1304 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.95□□□□□ -1.3
SCN1A-204ENST00000423058 O00370 1275 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 ZNF185O15231 689 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 GATBO75879 557 aaKnown RBP6.95□□□□□ -1.3
SCN1A-204ENST00000423058 S100A9P06702 114 aaKnown RBP6.95□□□□□ -1.3
SCN1A-204ENST00000423058 GZMAP12544 262 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 TCF4P15884 667 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 PGAM1P18669 254 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 OGNP20774 298 aaKnown RBP6.95□□□□□ -1.3
SCN1A-204ENST00000423058 CASRP41180 1078 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 CDK7P50613 346 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 ARFIP1P53367 373 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 PTPN11Q06124 597 aaPredicted RBP6.95□□□□□ -1.3
SCN1A-204ENST00000423058 ACSM2AQ08AH3 577 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 DMPKQ09013 629 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 SMARCB1Q12824 385 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 SLC15A2Q16348 729 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 BMT2Q1RMZ1 405 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 Q4G0T1 1027 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 SLC39A12Q504Y0 691 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 TBCELQ5QJ74 424 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 GPR158Q5T848 1215 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 ACSM2BQ68CK6 577 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 ZSCAN1Q8NBB4 408 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 TSPAN18Q96SJ8 248 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 CORO1BQ9BR76 489 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 MCCC2Q9HCC0 563 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 COPS7AQ9UBW8 275 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 SLC24A2Q9UI40 661 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 RABGEF1Q9UJ41 708 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 MKL2Q9ULH7 1088 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 ST3GAL5Q9UNP4 418 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 SERPINB7O75635 380 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 PSMB9P28065 219 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 FASTKQ14296 549 aaKnown RBP6.95□□□□□ -1.3
SCN1A-204ENST00000423058 MYBPC3Q14896 1274 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 SHC4Q6S5L8 630 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 ATCAYQ86WG3 371 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 PHF21BQ96EK2 531 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 IL22Q9GZX6 179 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 PIF1Q9H611 641 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 GMIPQ9P107 970 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 GIT1Q9Y2X7 761 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 GPR75-ASB3A0A0A6YYF3 556 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 BTN3A1O00481 513 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 KPNA4O00629 521 aaPredicted RBP6.94□□□□□ -1.3
SCN1A-204ENST00000423058 XKRYO14609 159 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 USP17L7P0C7H9 530 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 CRATP43155 626 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 MASP1P48740 699 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 NEK3P51956 506 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 MBTD1Q05BQ5 628 aa6.94□□□□□ -1.3
SCN1A-204ENST00000423058 C1QBPQ07021 282 aaKnown RBP6.94□□□□□ -1.3
SCN1A-204ENST00000423058 MAPK7Q13164 816 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms