RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 TMPRSS4Q9NRS4 437 aa9.97□□□□□ -0.81
CD44-206ENST00000415148 KLHL8Q9P2G9 620 aaPredicted RBP9.97□□□□□ -0.81
CD44-206ENST00000415148 APPL1Q9UKG1 709 aa9.97□□□□□ -0.81
CD44-206ENST00000415148 RAB26Q9ULW5 256 aa9.97□□□□□ -0.81
CD44-206ENST00000415148 LMO2P25791 158 aa9.97□□□□□ -0.81
CD44-206ENST00000415148 AXLP30530 894 aa9.97□□□□□ -0.81
CD44-206ENST00000415148 SERPINB5P36952 375 aa9.97□□□□□ -0.81
CD44-206ENST00000415148 DPP6P42658 865 aa9.97□□□□□ -0.81
CD44-206ENST00000415148 IREB2P48200 963 aaKnown RBP9.97□□□□□ -0.81
CD44-206ENST00000415148 MS4A2Q01362 244 aa9.97□□□□□ -0.81
CD44-206ENST00000415148 SCAPQ12770 1279 aa9.97□□□□□ -0.81
CD44-206ENST00000415148 GRIK4Q16099 956 aa9.97□□□□□ -0.81
CD44-206ENST00000415148 MYLK3Q32MK0 819 aa9.97□□□□□ -0.81
CD44-206ENST00000415148 LRRC23Q53EV4 343 aaPredicted RBP9.97□□□□□ -0.81
CD44-206ENST00000415148 MARCH8Q5T0T0 291 aa9.97□□□□□ -0.81
CD44-206ENST00000415148 OTUD1Q5VV17 481 aaPredicted RBP9.97□□□□□ -0.81
CD44-206ENST00000415148 LIPMQ5VYY2 423 aa9.97□□□□□ -0.81
CD44-206ENST00000415148 ITPRIPL1Q6GPH6 555 aa9.97□□□□□ -0.81
CD44-206ENST00000415148 NOTUMQ6P988 496 aa9.97□□□□□ -0.81
CD44-206ENST00000415148 KLHDC10Q6PID8 442 aa9.97□□□□□ -0.81
CD44-206ENST00000415148 ZYG11AQ6WRX3 759 aa9.97□□□□□ -0.81
CD44-206ENST00000415148 PIGZQ86VD9 579 aa9.97□□□□□ -0.81
CD44-206ENST00000415148 GPC2Q8N158 579 aa9.97□□□□□ -0.81
CD44-206ENST00000415148 C18orf25Q96B23 403 aaPredicted RBP9.97□□□□□ -0.81
CD44-206ENST00000415148 ADAMTS10Q9H324 1103 aa9.97□□□□□ -0.81
CD44-206ENST00000415148 WDR55Q9H6Y2 383 aaPredicted RBP9.97□□□□□ -0.81
CD44-206ENST00000415148 MRGBPQ9NV56 204 aa9.97□□□□□ -0.81
CD44-206ENST00000415148 SETD4Q9NVD3 440 aa9.97□□□□□ -0.81
CD44-206ENST00000415148 ATXN10Q9UBB4 475 aa9.97□□□□□ -0.81
CD44-206ENST00000415148 PPP1R1BQ9UD71 204 aaPredicted RBP9.97□□□□□ -0.81
CD44-206ENST00000415148 KCNH4Q9UQ05 1017 aa9.97□□□□□ -0.81
CD44-206ENST00000415148 DTNAQ9Y4J8 743 aa9.97□□□□□ -0.81
CD44-206ENST00000415148 SCN1AP35498 2009 aa9.97□□□□□ -0.81
CD44-206ENST00000415148 RRN3P2A6NIE6 340 aa9.96□□□□□ -0.81
CD44-206ENST00000415148 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.96□□□□□ -0.81
CD44-206ENST00000415148 M0QYT0 321 aa9.96□□□□□ -0.81
CD44-206ENST00000415148 AIM2O14862 343 aa9.96□□□□□ -0.81
CD44-206ENST00000415148 CREB3O43889 395 aa9.96□□□□□ -0.81
CD44-206ENST00000415148 CRTAMO95727 393 aa9.96□□□□□ -0.81
CD44-206ENST00000415148 LTFP02788 710 aa9.96□□□□□ -0.81
CD44-206ENST00000415148 CAPNS1P04632 268 aa9.96□□□□□ -0.81
CD44-206ENST00000415148 CHRNGP07510 517 aa9.96□□□□□ -0.81
CD44-206ENST00000415148 ARSAP15289 507 aa9.96□□□□□ -0.81
CD44-206ENST00000415148 XRCC1P18887 633 aaPredicted RBP9.96□□□□□ -0.81
CD44-206ENST00000415148 CYP2B6P20813 491 aa9.96□□□□□ -0.81
CD44-206ENST00000415148 PIK3R1P27986 724 aa9.96□□□□□ -0.81
CD44-206ENST00000415148 ADRA1BP35368 520 aa9.96□□□□□ -0.81
CD44-206ENST00000415148 PKNOX1P55347 436 aa9.96□□□□□ -0.81
CD44-206ENST00000415148 MRPS22P82650 360 aaKnown RBP9.96□□□□□ -0.81
CD44-206ENST00000415148 PRKAA1Q13131 559 aa9.96□□□□□ -0.81
CD44-206ENST00000415148 MPP3Q13368 585 aa9.96□□□□□ -0.81
CD44-206ENST00000415148 CYLC2Q14093 348 aaPredicted RBP9.96□□□□□ -0.81
CD44-206ENST00000415148 RFTN1Q14699 578 aaPredicted RBP9.96□□□□□ -0.81
CD44-206ENST00000415148 ANO4Q32M45 955 aa9.96□□□□□ -0.81
CD44-206ENST00000415148 SV2CQ496J9 727 aa9.96□□□□□ -0.81
CD44-206ENST00000415148 C6orf52Q5T4I8 152 aa9.96□□□□□ -0.81
CD44-206ENST00000415148 SEL1L3Q68CR1 1132 aa9.96□□□□□ -0.81
CD44-206ENST00000415148 IYDQ6PHW0 289 aa9.96□□□□□ -0.81
CD44-206ENST00000415148 FASTKD5Q7L8L6 764 aaKnown RBP9.96□□□□□ -0.81
CD44-206ENST00000415148 DNAAF3Q8N9W5 541 aa9.96□□□□□ -0.81
CD44-206ENST00000415148 DLG3Q92796 817 aa9.96□□□□□ -0.81
CD44-206ENST00000415148 FAM149B1Q96BN6 582 aa9.96□□□□□ -0.81
CD44-206ENST00000415148 MARK4Q96L34 752 aa9.96□□□□□ -0.81
CD44-206ENST00000415148 CNBD2Q96M20 576 aa9.96□□□□□ -0.81
CD44-206ENST00000415148 TSNARE1Q96NA8 513 aa9.96□□□□□ -0.81
CD44-206ENST00000415148 AGAP3Q96P47 875 aa9.96□□□□□ -0.81
CD44-206ENST00000415148 GPR22Q99680 433 aa9.96□□□□□ -0.81
CD44-206ENST00000415148 GATA5Q9BWX5 397 aaPredicted RBP9.96□□□□□ -0.81
CD44-206ENST00000415148 GBA3Q9H227 469 aa9.96□□□□□ -0.81
CD44-206ENST00000415148 ZNF385DQ9H6B1 395 aa9.96□□□□□ -0.81
CD44-206ENST00000415148 CAB39LQ9H9S4 337 aa9.96□□□□□ -0.81
CD44-206ENST00000415148 RNF19AQ9NV58 838 aa9.96□□□□□ -0.81
CD44-206ENST00000415148 PLK2Q9NYY3 685 aa9.96□□□□□ -0.81
CD44-206ENST00000415148 MAGED2Q9UNF1 606 aaPredicted RBP9.96□□□□□ -0.81
CD44-206ENST00000415148 LZTS1Q9Y250 596 aa9.96□□□□□ -0.81
CD44-206ENST00000415148 OTOFQ9HC10 1997 aa9.96□□□□□ -0.81
CD44-206ENST00000415148 C9IYK1 514 aa9.96□□□□□ -0.82
CD44-206ENST00000415148 NEMP1O14524 444 aa9.96□□□□□ -0.82
CD44-206ENST00000415148 NELFEP18615 380 aaKnown RBP9.96□□□□□ -0.82
CD44-206ENST00000415148 WARSP23381 471 aaKnown RBP9.96□□□□□ -0.82
CD44-206ENST00000415148 TAF6P49848 677 aa9.96□□□□□ -0.82
CD44-206ENST00000415148 THOP1P52888 689 aa9.96□□□□□ -0.82
CD44-206ENST00000415148 GJA9P57773 515 aa9.96□□□□□ -0.82
CD44-206ENST00000415148 ADIGQ0VDE8 80 aa9.96□□□□□ -0.82
CD44-206ENST00000415148 SEMA3BQ13214 749 aa9.96□□□□□ -0.82
CD44-206ENST00000415148 HSP90AA5PQ58FG0 334 aa9.96□□□□□ -0.82
CD44-206ENST00000415148 XKR4Q5GH76 650 aa9.96□□□□□ -0.82
CD44-206ENST00000415148 PIGGQ5H8A4 983 aa9.96□□□□□ -0.82
CD44-206ENST00000415148 RARS2Q5T160 578 aaKnown RBP9.96□□□□□ -0.82
CD44-206ENST00000415148 TMEM198Q66K66 360 aa9.96□□□□□ -0.82
CD44-206ENST00000415148 KCNMB4Q86W47 210 aa9.96□□□□□ -0.82
CD44-206ENST00000415148 DSELQ8IZU8 1212 aa9.96□□□□□ -0.82
CD44-206ENST00000415148 PGAM4Q8N0Y7 254 aa9.96□□□□□ -0.82
CD44-206ENST00000415148 TOP6BLQ8N6T0 577 aa9.96□□□□□ -0.82
CD44-206ENST00000415148 FAM156AQ8NDB6 213 aa9.96□□□□□ -0.82
CD44-206ENST00000415148 ADCY4Q8NFM4 1077 aa9.96□□□□□ -0.82
CD44-206ENST00000415148 ZFP28Q8NHY6 868 aa9.96□□□□□ -0.82
CD44-206ENST00000415148 GRIN3AQ8TCU5 1115 aa9.96□□□□□ -0.82
CD44-206ENST00000415148 PDCD6IPQ8WUM4 868 aaKnown RBP9.96□□□□□ -0.82
CD44-206ENST00000415148 USP13Q92995 863 aaPredicted RBP9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms