RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 MPP4Q96JB8 637 aa5.84□□□□□ -1.47
CCDC88A-203ENST00000412148 CLMNQ96JQ2 1002 aa5.84□□□□□ -1.47
CCDC88A-203ENST00000412148 TSGA13Q96PP4 275 aa5.84□□□□□ -1.47
CCDC88A-203ENST00000412148 SLC2A13Q96QE2 648 aa5.84□□□□□ -1.47
CCDC88A-203ENST00000412148 ANKRD60Q9BZ19 345 aa5.84□□□□□ -1.47
CCDC88A-203ENST00000412148 UNC93B1Q9H1C4 597 aa5.84□□□□□ -1.47
CCDC88A-203ENST00000412148 GBA3Q9H227 469 aa5.84□□□□□ -1.47
CCDC88A-203ENST00000412148 ARMC1Q9NVT9 282 aa5.84□□□□□ -1.47
CCDC88A-203ENST00000412148 RRN3Q9NYV6 651 aa5.84□□□□□ -1.47
CCDC88A-203ENST00000412148 BFARQ9NZS9 450 aa5.84□□□□□ -1.47
CCDC88A-203ENST00000412148 LIMD1Q9UGP4 676 aa5.84□□□□□ -1.47
CCDC88A-203ENST00000412148 TCAF2A6NFQ2 919 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 B4GALT5O43286 388 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 DDHD2O94830 711 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 C2P06681 752 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 SBK3P0C264 359 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 SRGAP2BP0DMP2 458 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 CYP2B6P20813 491 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 SLC7A1P30825 629 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 HTR7P34969 479 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 NOS2P35228 1153 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 THOP1P52888 689 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 EMP3P54852 163 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 SP4Q02446 784 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 DCTN2Q13561 401 aaKnown RBP5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 CEACAM7Q14002 265 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 SPIDRQ14159 915 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 MFSD10Q14728 455 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 MYBPC3Q14896 1274 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 SLC14A2Q15849 920 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 GRAMD1BQ3KR37 738 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 LSM12Q3MHD2 195 aaKnown RBP5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 HSDL1Q3SXM5 330 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 XKR4Q5GH76 650 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 INTS11Q5TA45 600 aaKnown RBP5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 ITPRIPL1Q6GPH6 555 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 RWDD4Q6NW29 188 aaKnown RBP5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 EFCAB12Q6NXP0 572 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 ALKAL1Q6UXT8 129 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 RBM44Q6ZP01 1051 aaKnown RBP5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 PIWIL4Q7Z3Z4 852 aaKnown RBP5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 LINC00523Q86TU6 105 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 TMEM192Q8IY95 271 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 ANKRD13AQ8IZ07 590 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 LILRA2Q8N149 483 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 ZNF567Q8N184 647 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 ANKFN1Q8N957 763 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 TERB1Q8NA31 727 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 ZFP28Q8NHY6 868 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 SHKBP1Q8TBC3 707 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 GAB3Q8WWW8 586 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 ZUFSPQ96AP4 578 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 FCRL3Q96P31 734 aaPredicted RBP5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 GCNAQ96QF7 691 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 MMP19Q99542 508 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 DHX35Q9H5Z1 703 aaKnown RBP5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 MINDY3Q9H8M7 445 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 ZNF277Q9NRM2 450 aaPredicted RBP5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 PNPLA3Q9NST1 481 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 TMEM45AQ9NWC5 275 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 ERAP1Q9NZ08 941 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 CDYLQ9Y232 598 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 RPS6KL1Q9Y6S9 549 aa5.84□□□□□ -1.48
CCDC88A-203ENST00000412148 PALM2-AKAP2B1ALY0 433 aaPredicted RBP5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 H3BNH8 94 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 INO80B-WBP1J3KQ70 363 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 MFSD11O43934 449 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 H6PDO95479 791 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 TOP3BO95985 862 aaKnown RBP5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 CDK4P11802 303 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 BMP2P12643 396 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 HOXD8P13378 290 aaPredicted RBP5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 TFEBP19484 476 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 NCF2P19878 526 aaPredicted RBP5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 PNPLA4P41247 253 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 NUDT2P50583 147 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 VAC14Q08AM6 782 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 FSTL1Q12841 308 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 IFRD2Q12894 506 aaPredicted RBP5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 STX5Q13190 355 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 MPP3Q13368 585 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 MTM1Q13496 603 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 SLC12A1Q13621 1099 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 TRIM25Q14258 630 aaKnown RBP5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 CDO1Q16878 200 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 MYLK3Q32MK0 819 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 COQ5Q5HYK3 327 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 TCHHL1Q5QJ38 904 aaPredicted RBP5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 OTUD1Q5VV17 481 aaPredicted RBP5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 SCYL2Q6P3W7 929 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 CHRDL2Q6WN34 429 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 SNX32Q86XE0 403 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 SCML4Q8N228 414 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 PLD6Q8N2A8 252 aaKnown RBP5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 TAB3Q8N5C8 712 aaPredicted RBP5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 ZNF420Q8TAQ5 688 aaPredicted RBP5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 RNF139Q8WU17 664 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 SGF29Q96ES7 293 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 VPS39Q96JC1 886 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 OR52B2Q96RD2 323 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms