RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 TOR1BO14657 336 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 AOC2O75106 756 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 HALP42357 657 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 NDST2P52849 883 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 TPD52P55327 224 aaPredicted RBP13.19□□□□□ -0.3
PTPRN-202ENST00000409251 PDAP1Q13442 181 aaKnown RBP13.19□□□□□ -0.3
PTPRN-202ENST00000409251 PIGHQ14442 188 aaPredicted RBP13.19□□□□□ -0.3
PTPRN-202ENST00000409251 MARCH8Q5T0T0 291 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 EGFLAMQ63HQ2 1017 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 SLC35B2Q8TB61 432 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 EXT2Q93063 718 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 PIWIL1Q96J94 861 aaKnown RBP13.19□□□□□ -0.3
PTPRN-202ENST00000409251 ZNF778Q96MU6 729 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 ZMAT2Q96NC0 199 aaKnown RBP13.19□□□□□ -0.3
PTPRN-202ENST00000409251 OMDQ99983 421 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 B3GNT5Q9BYG0 378 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 WDR41Q9HAD4 459 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 CCDC167Q9P0B6 97 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 VPS51Q9UID3 782 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 SF3B1O75533 1304 aaKnown RBP eCLIP13.19□□□□□ -0.3
PTPRN-202ENST00000409251 K7EPI3 171 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 MAN1A2O60476 641 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 C15orf39Q6ZRI6 1047 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 WDR49Q8IV35 697 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 LILRA2Q8N149 483 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 MAPK15Q8TD08 544 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 MZB1Q8WU39 189 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 APBA2Q99767 749 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 MTG1Q9BT17 334 aaPredicted RBP13.19□□□□□ -0.3
PTPRN-202ENST00000409251 FZD8Q9H461 694 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 SACM1LQ9NTJ5 587 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 PRMT7Q9NVM4 692 aaPredicted RBP13.19□□□□□ -0.3
PTPRN-202ENST00000409251 WDR70Q9NW82 654 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 SFMBT1Q9UHJ3 866 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 FARP1Q9Y4F1 1045 aaPredicted RBP13.19□□□□□ -0.3
PTPRN-202ENST00000409251 ATP6AP2A0A1C7CYW4 349 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 FBP2O00757 339 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 TSPAN1O60635 241 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 ATP6AP2O75787 350 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 CPA3P15088 417 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 ZFXP17010 805 aaPredicted RBP13.19□□□□□ -0.3
PTPRN-202ENST00000409251 TSPAN8P19075 237 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 NDST1P52848 882 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 FAM110CQ1W6H9 321 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 TRIM16LQ309B1 348 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 DCAF6Q58WW2 860 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 TEDDM1Q5T9Z0 273 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 CTU1Q7Z7A3 348 aaKnown RBP13.19□□□□□ -0.3
PTPRN-202ENST00000409251 EXOC8Q8IYI6 725 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 NCSTNQ92542 709 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 CDKL2Q92772 493 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 CYP4F12Q9HCS2 524 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 VTA1Q9NP79 307 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 DPP3Q9NY33 737 aa13.19□□□□□ -0.3
PTPRN-202ENST00000409251 DDX56Q9NY93 547 aaKnown RBP13.19□□□□□ -0.3
PTPRN-202ENST00000409251 RBBP6Q7Z6E9 1792 aaKnown RBP13.18□□□□□ -0.3
PTPRN-202ENST00000409251 MMP8P22894 467 aa13.18□□□□□ -0.3
PTPRN-202ENST00000409251 PCYT1AP49585 367 aa13.18□□□□□ -0.3
PTPRN-202ENST00000409251 LSM3P62310 102 aaKnown RBP13.18□□□□□ -0.3
PTPRN-202ENST00000409251 POU5F1BQ06416 359 aa13.18□□□□□ -0.3
PTPRN-202ENST00000409251 PTPN20Q4JDL3 420 aa13.18□□□□□ -0.3
PTPRN-202ENST00000409251 HABP4Q5JVS0 413 aaKnown RBP13.18□□□□□ -0.3
PTPRN-202ENST00000409251 NKD2Q969F2 451 aaPredicted RBP13.18□□□□□ -0.3
PTPRN-202ENST00000409251 GCOM2Q9BZD3 368 aaPredicted RBP13.18□□□□□ -0.3
PTPRN-202ENST00000409251 UBP1Q9NZI7 540 aa13.18□□□□□ -0.3
PTPRN-202ENST00000409251 MYRFQ9Y2G1 1151 aa13.18□□□□□ -0.3
PTPRN-202ENST00000409251 RANBP2P49792 3224 aaKnown RBP13.18□□□□□ -0.3
PTPRN-202ENST00000409251 TMEM233B4DJY2 109 aa13.18□□□□□ -0.3
PTPRN-202ENST00000409251 PLOD2O00469 737 aa13.18□□□□□ -0.3
PTPRN-202ENST00000409251 RNASEH2AO75792 299 aaKnown RBP13.18□□□□□ -0.3
PTPRN-202ENST00000409251 CCDC130P13994 396 aa13.18□□□□□ -0.3
PTPRN-202ENST00000409251 EEF1DP29692 281 aaKnown RBP13.18□□□□□ -0.3
PTPRN-202ENST00000409251 PLK1P53350 603 aa13.18□□□□□ -0.3
PTPRN-202ENST00000409251 SLC18A1P54219 525 aa13.18□□□□□ -0.3
PTPRN-202ENST00000409251 NAGLUP54802 743 aa13.18□□□□□ -0.3
PTPRN-202ENST00000409251 NR1D2Q14995 579 aa13.18□□□□□ -0.3
PTPRN-202ENST00000409251 SAPCD2Q86UD0 394 aa13.18□□□□□ -0.3
PTPRN-202ENST00000409251 SCUBE3Q8IX30 993 aa13.18□□□□□ -0.3
PTPRN-202ENST00000409251 CASP10Q92851 521 aa13.18□□□□□ -0.3
PTPRN-202ENST00000409251 CCDC90BQ9GZT6 254 aa13.18□□□□□ -0.3
PTPRN-202ENST00000409251 POLR1BQ9H9Y6 1135 aa13.18□□□□□ -0.3
PTPRN-202ENST00000409251 EGFL7Q9UHF1 273 aa13.18□□□□□ -0.3
PTPRN-202ENST00000409251 CYTH4Q9UIA0 394 aa13.18□□□□□ -0.3
PTPRN-202ENST00000409251 DRG1Q9Y295 367 aaKnown RBP13.18□□□□□ -0.3
PTPRN-202ENST00000409251 PHGDHO43175 533 aaKnown RBP13.18□□□□□ -0.3
PTPRN-202ENST00000409251 RECQL4O94761 1208 aa13.18□□□□□ -0.3
PTPRN-202ENST00000409251 MGAT1P26572 445 aa13.18□□□□□ -0.3
PTPRN-202ENST00000409251 PIK3R1P27986 724 aa13.18□□□□□ -0.3
PTPRN-202ENST00000409251 CTGFP29279 349 aa13.18□□□□□ -0.3
PTPRN-202ENST00000409251 GJA8P48165 433 aa13.18□□□□□ -0.3
PTPRN-202ENST00000409251 SNRPFP62306 86 aaKnown RBP13.18□□□□□ -0.3
PTPRN-202ENST00000409251 WASHC5Q12768 1159 aa13.18□□□□□ -0.3
PTPRN-202ENST00000409251 MFSD10Q14728 455 aa13.18□□□□□ -0.3
PTPRN-202ENST00000409251 TMEM26Q6ZUK4 368 aa13.18□□□□□ -0.3
PTPRN-202ENST00000409251 RPS27LQ71UM5 84 aaKnown RBP13.18□□□□□ -0.3
PTPRN-202ENST00000409251 NUP93Q8N1F7 819 aa13.18□□□□□ -0.3
PTPRN-202ENST00000409251 TSNARE1Q96NA8 513 aa13.18□□□□□ -0.3
PTPRN-202ENST00000409251 CPXM1Q96SM3 734 aa13.18□□□□□ -0.3
PTPRN-202ENST00000409251 NAA50Q9GZZ1 169 aaKnown RBP13.18□□□□□ -0.3
PTPRN-202ENST00000409251 TASP1Q9H6P5 420 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 287.7 ms