RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 SREK1Q8WXA9 508 aaKnown RBP10.49□□□□□ -0.73
COL6A3-205ENST00000392004 SH3GL3Q99963 347 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 ERP44Q9BS26 406 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 RRN3Q9NYV6 651 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 GGT7Q9UJ14 662 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 CHKBQ9Y259 395 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 R3HDM2Q9Y2K5 976 aaKnown RBP10.49□□□□□ -0.73
COL6A3-205ENST00000392004 YBX2Q9Y2T7 364 aaKnown RBP10.49□□□□□ -0.73
COL6A3-205ENST00000392004 USP15Q9Y4E8 981 aaPredicted RBP10.49□□□□□ -0.73
COL6A3-205ENST00000392004 DNAH12Q6ZR08 3092 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 RGPD3A6NKT7 1758 aaPredicted RBP10.49□□□□□ -0.73
COL6A3-205ENST00000392004 RGPD4Q7Z3J3 1758 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 SH3BP5O60239 455 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 UBOX5O94941 541 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 CYP1A2P05177 515 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 UNGP13051 313 aaPredicted RBP10.49□□□□□ -0.73
COL6A3-205ENST00000392004 CHRM3P20309 590 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 IL1R2P27930 398 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 RENBPP51606 427 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 ATXN3P54252 364 aaPredicted RBP10.49□□□□□ -0.73
COL6A3-205ENST00000392004 BCL2L1Q07817 233 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 GALNT3Q14435 633 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 GRIN2CQ14957 1233 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 ACOX1Q15067 660 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 TAF11Q15544 211 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 TCTN1Q2MV58 587 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 KIAA0319Q5VV43 1072 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 ANO7Q6IWH7 933 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 ADGRD2Q7Z7M1 963 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 PSMG2Q969U7 264 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 PGM2Q96G03 612 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 RNF157Q96PX1 679 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 TSPAN18Q96SJ8 248 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 EBF2Q9HAK2 575 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 AASDHPPTQ9NRN7 309 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 CPSF2Q9P2I0 782 aaKnown RBP10.49□□□□□ -0.73
COL6A3-205ENST00000392004 ANGPTL3Q9Y5C1 460 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 RASA4BC9J798 803 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 SLC31A1O15431 190 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 RASA4O43374 803 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 PSMB4P28070 264 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 ATP5DP30049 168 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 GKP32189 559 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 LPAL2Q16609 132 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 OTOP3Q7RTS5 596 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 SRRM1Q8IYB3 904 aaKnown RBP10.49□□□□□ -0.73
COL6A3-205ENST00000392004 SNF8Q96H20 258 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 CSPG4P5Q96PW8 444 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 SLC22A12Q96S37 553 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 MTG2Q9H4K7 406 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 FBXO10Q9UK96 956 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 PKP3Q9Y446 797 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 MFHAS1Q9Y4C4 1052 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 PCDHA3Q9Y5H8 950 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 HEPACAM2A8MVW5 462 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 NDUFS3O75489 264 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 NFATC1O95644 943 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 MT-ND3P03897 115 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 DGKGP49619 791 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 CCNHP51946 323 aaPredicted RBP10.49□□□□□ -0.73
COL6A3-205ENST00000392004 RBBP5Q15291 538 aaKnown RBP10.49□□□□□ -0.73
COL6A3-205ENST00000392004 PLEKHA7Q6IQ23 1121 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 FOXR2Q6PJQ5 311 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 LMNTD2Q8IXW0 634 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 WDTC1Q8N5D0 677 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 PTPRN2Q92932 1015 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 SH3KBP1Q96B97 665 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 RAB3IPQ96QF0 476 aaPredicted RBP10.49□□□□□ -0.73
COL6A3-205ENST00000392004 KCTD15Q96SI1 283 aaPredicted RBP10.49□□□□□ -0.73
COL6A3-205ENST00000392004 CACNA2D2Q9NY47 1150 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 PCDHGC3Q9UN70 934 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 SLC12A4Q9UP95 1085 aa10.49□□□□□ -0.73
COL6A3-205ENST00000392004 MFSD11O43934 449 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 OAZ2O95190 189 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 CYP1A1P04798 512 aaPredicted RBP10.48□□□□□ -0.73
COL6A3-205ENST00000392004 CCNB1P14635 433 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 PCK1P35558 622 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 DSG1Q02413 1049 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 SGCGQ13326 291 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 DHX34Q14147 1143 aaKnown RBP10.48□□□□□ -0.73
COL6A3-205ENST00000392004 SLC29A2Q14542 456 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 ZNF449Q6P9G9 518 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 C3orf62Q6ZUJ4 267 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 SPATA22Q8NHS9 363 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 FBXO25Q8TCJ0 367 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 FGF13Q92913 245 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 CFHR5Q9BXR6 569 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 YIPF3Q9GZM5 350 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 ZCWPW1Q9H0M4 648 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 TASP1Q9H6P5 420 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 PAK5Q9P286 719 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 KLHL14Q9P2G3 628 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 PCDHA11Q9Y5I1 949 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 TRBV23OR9-2A0A075B6M9 112 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 LEFTY2O00292 366 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 LINC01565O15544 149 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 SNX2O60749 519 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 BANF1O75531 89 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 SHBGP04278 402 aa10.48□□□□□ -0.73
COL6A3-205ENST00000392004 RB1P06400 928 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms