RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 CCDC130P13994 396 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 SOX11P35716 441 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 DPYSQ14117 519 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 EEF1DP3Q658K8 133 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 STYK1Q6J9G0 422 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 PMF1Q6P1K2 205 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 DHRS4L2Q6PKH6 230 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 DCDC5Q6ZRR9 648 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 CHSY3Q70JA7 882 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 C1orf127Q8N9H9 656 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 DNAAF3Q8N9W5 541 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 ASB9Q96DX5 294 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 MFSD3Q96ES6 412 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 VPS50Q96JG6 964 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 CPNE1Q99829 537 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 TRPC7Q9HCX4 862 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 VPS28Q9UK41 221 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 A0A0A0MRY4 1105 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 PRORSD1PA6NEY8 169 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 RNF103O00237 685 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 ZFXP17010 805 aaPredicted RBP16.13■□□□□ 0.17
CKAP4-201ENST00000378026 NDST1P52848 882 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 NME3Q13232 169 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 PMS2P3Q13401 168 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 KIZQ2M2Z5 673 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 SETD3Q86TU7 594 aaPredicted RBP16.13■□□□□ 0.17
CKAP4-201ENST00000378026 OFCC1Q8IZS5 231 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 DQX1Q8TE96 717 aaKnown RBP16.13■□□□□ 0.17
CKAP4-201ENST00000378026 SPATA13Q96N96 652 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 PRDM16Q9HAZ2 1276 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 DUS2Q9NX74 493 aaKnown RBP16.13■□□□□ 0.17
CKAP4-201ENST00000378026 MORF4L1Q9UBU8 362 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 CNOT6Q9ULM6 557 aaKnown RBP16.13■□□□□ 0.17
CKAP4-201ENST00000378026 PCDHGA7Q9Y5G6 932 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 INO80B-WBP1J3KQ70 363 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 KCNK1O00180 336 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 WDR46O15213 610 aaKnown RBP16.13■□□□□ 0.17
CKAP4-201ENST00000378026 CILPO75339 1184 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 YAP1P46937 504 aaKnown RBP16.13■□□□□ 0.17
CKAP4-201ENST00000378026 NEDD8Q15843 81 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 ZBED5Q49AG3 693 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 AARS2Q5JTZ9 985 aaKnown RBP16.13■□□□□ 0.17
CKAP4-201ENST00000378026 SNRNP48Q6IEG0 339 aaKnown RBP16.13■□□□□ 0.17
CKAP4-201ENST00000378026 CLEC4CQ8WTT0 213 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 CYGBQ8WWM9 190 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 RSPH1Q8WYR4 309 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 QKIQ96PU8 341 aaKnown RBP eCLIP16.13■□□□□ 0.17
CKAP4-201ENST00000378026 PPP1R16BQ96T49 567 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 GPATCH1Q9BRR8 931 aaKnown RBP16.13■□□□□ 0.17
CKAP4-201ENST00000378026 ZNF670Q9BS34 389 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 RPAP3Q9H6T3 665 aaPredicted RBP16.13■□□□□ 0.17
CKAP4-201ENST00000378026 CNOT11Q9UKZ1 510 aaKnown RBP16.13■□□□□ 0.17
CKAP4-201ENST00000378026 SNX9Q9Y5X1 595 aa16.13■□□□□ 0.17
CKAP4-201ENST00000378026 A0A087WXM4 84 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 YDJCA8MPS7 323 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 HOXD12P35452 270 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 RHDQ02161 417 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 PRKCQQ04759 706 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 MTA1Q13330 715 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 ZNF460Q14592 562 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 PDCD4Q53EL6 469 aaKnown RBP16.12■□□□□ 0.17
CKAP4-201ENST00000378026 CYS1Q717R9 158 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 TP53INP2Q8IXH6 220 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 CBR4Q8N4T8 237 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 NSUN6Q8TEA1 469 aaKnown RBP16.12■□□□□ 0.17
CKAP4-201ENST00000378026 CANT1Q8WVQ1 401 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 PPP1R10Q96QC0 940 aaKnown RBP16.12■□□□□ 0.17
CKAP4-201ENST00000378026 HIPK3Q9H422 1215 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 IL1RL2Q9HB29 575 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 VPS45Q9NRW7 570 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 GTSE1Q9NYZ3 720 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 AP4E1Q9UPM8 1137 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 RUVBL2Q9Y230 463 aaKnown RBP16.12■□□□□ 0.17
CKAP4-201ENST00000378026 PTPRFP10586 1907 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 H3BMQ9 156 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 TPH1P17752 444 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 GRIA3P42263 894 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 LIMK2P53671 638 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 GNA12Q03113 381 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 TRAF2Q12933 501 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 GOLGA7BQ2TAP0 167 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 ZPBP2Q6X784 338 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 PID1Q7Z2X4 250 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 LYSMD3Q7Z3D4 306 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 CCDC185Q8N715 623 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 KCTD4Q8WVF5 259 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 BORCS5Q969J3 196 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 COG8Q96MW5 612 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 CSPG4P5Q96PW8 444 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 KCTD15Q96SI1 283 aaPredicted RBP16.12■□□□□ 0.17
CKAP4-201ENST00000378026 LPIN3Q9BQK8 851 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 DRC3Q9H069 523 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 TMEM134Q9H6X4 195 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 RPF2Q9H7B2 306 aaKnown RBP16.12■□□□□ 0.17
CKAP4-201ENST00000378026 POLR1BQ9H9Y6 1135 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 TMPRSS4Q9NRS4 437 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 IARS2Q9NSE4 1012 aaKnown RBP16.12■□□□□ 0.17
CKAP4-201ENST00000378026 SMOXQ9NWM0 555 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 TRIM17Q9Y577 477 aa16.12■□□□□ 0.17
CKAP4-201ENST00000378026 CNTNAP1P78357 1384 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms