RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 PQLC3Q8N755 202 aa14.61□□□□□ -0.07
HMGA1-203ENST00000374116 PLD5Q8N7P1 536 aa14.61□□□□□ -0.07
HMGA1-203ENST00000374116 FBF1Q8TES7 1133 aa14.61□□□□□ -0.07
HMGA1-203ENST00000374116 EZH1Q92800 747 aaPredicted RBP14.61□□□□□ -0.07
HMGA1-203ENST00000374116 TRMT2BQ96GJ1 504 aaKnown RBP14.61□□□□□ -0.07
HMGA1-203ENST00000374116 TTLL2Q9BWV7 592 aa14.61□□□□□ -0.07
HMGA1-203ENST00000374116 TRABDQ9H4I3 376 aa14.61□□□□□ -0.07
HMGA1-203ENST00000374116 CCSER2Q9H7U1 834 aa14.61□□□□□ -0.07
HMGA1-203ENST00000374116 PCDH18Q9HCL0 1135 aa14.61□□□□□ -0.07
HMGA1-203ENST00000374116 PNPLA8Q9NP80 782 aa14.61□□□□□ -0.07
HMGA1-203ENST00000374116 IL37Q9NZH6 218 aa14.61□□□□□ -0.07
HMGA1-203ENST00000374116 PSMC3IPQ9P2W1 217 aaPredicted RBP14.61□□□□□ -0.07
HMGA1-203ENST00000374116 PRKAG3Q9UGI9 489 aa14.61□□□□□ -0.07
HMGA1-203ENST00000374116 RABGEF1Q9UJ41 708 aa14.61□□□□□ -0.07
HMGA1-203ENST00000374116 SMG5Q9UPR3 1016 aaKnown RBP14.61□□□□□ -0.07
HMGA1-203ENST00000374116 ARL2BPQ9Y2Y0 163 aa14.61□□□□□ -0.07
HMGA1-203ENST00000374116 USP3Q9Y6I4 520 aa14.61□□□□□ -0.07
HMGA1-203ENST00000374116 MUC3AQ02505 3323 aa14.6□□□□□ -0.07
HMGA1-203ENST00000374116 H7C0C1 242 aa14.6□□□□□ -0.07
HMGA1-203ENST00000374116 SMIM24O75264 130 aa14.6□□□□□ -0.07
HMGA1-203ENST00000374116 ZBED1O96006 694 aa14.6□□□□□ -0.07
HMGA1-203ENST00000374116 KRT15P19012 456 aa14.6□□□□□ -0.07
HMGA1-203ENST00000374116 CALB2P22676 271 aa14.6□□□□□ -0.07
HMGA1-203ENST00000374116 ATP5OP48047 213 aa14.6□□□□□ -0.07
HMGA1-203ENST00000374116 BASP1P80723 227 aaKnown RBP14.6□□□□□ -0.07
HMGA1-203ENST00000374116 DYNC1I2Q13409 638 aaKnown RBP14.6□□□□□ -0.07
HMGA1-203ENST00000374116 SMAD2Q15796 467 aaKnown RBP14.6□□□□□ -0.07
HMGA1-203ENST00000374116 MSS51Q4VC12 460 aa14.6□□□□□ -0.07
HMGA1-203ENST00000374116 GPR158Q5T848 1215 aa14.6□□□□□ -0.07
HMGA1-203ENST00000374116 RNF43Q68DV7 783 aa14.6□□□□□ -0.07
HMGA1-203ENST00000374116 SLC9A4Q6AI14 798 aa14.6□□□□□ -0.07
HMGA1-203ENST00000374116 BHLHA9Q7RTU4 235 aa14.6□□□□□ -0.07
HMGA1-203ENST00000374116 BNIPLQ7Z465 357 aa14.6□□□□□ -0.07
HMGA1-203ENST00000374116 SCD5Q86SK9 330 aa14.6□□□□□ -0.07
HMGA1-203ENST00000374116 ZC3H18Q86VM9 953 aaKnown RBP14.6□□□□□ -0.07
HMGA1-203ENST00000374116 NPAS3Q8IXF0 933 aa14.6□□□□□ -0.07
HMGA1-203ENST00000374116 PALM2Q8IXS6 379 aa14.6□□□□□ -0.07
HMGA1-203ENST00000374116 EDEM1Q92611 657 aa14.6□□□□□ -0.07
HMGA1-203ENST00000374116 RTP4Q96DX8 246 aa14.6□□□□□ -0.07
HMGA1-203ENST00000374116 SMC6Q96SB8 1091 aa14.6□□□□□ -0.07
HMGA1-203ENST00000374116 PAIP2Q9BPZ3 127 aaKnown RBP14.6□□□□□ -0.07
HMGA1-203ENST00000374116 GORASP1Q9BQQ3 440 aa14.6□□□□□ -0.07
HMGA1-203ENST00000374116 ZNF670Q9BS34 389 aa14.6□□□□□ -0.07
HMGA1-203ENST00000374116 SNRNP25Q9BV90 132 aaKnown RBP14.6□□□□□ -0.07
HMGA1-203ENST00000374116 FRMD8Q9BZ67 464 aaPredicted RBP14.6□□□□□ -0.07
HMGA1-203ENST00000374116 FBXO44Q9H4M3 255 aa14.6□□□□□ -0.07
HMGA1-203ENST00000374116 PAK5Q9P286 719 aa14.6□□□□□ -0.07
HMGA1-203ENST00000374116 DENND4AQ7Z401 1863 aa14.6□□□□□ -0.07
HMGA1-203ENST00000374116 ZNF840PA6NDX5 716 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 CHADO15335 359 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 ATP5HO75947 161 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 TMEM63AO94886 807 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 MXRA7P84157 204 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 GAD2Q05329 585 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 DPYSL2Q16555 572 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 CA9Q16790 459 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 NUGGCQ68CJ6 796 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 C1orf228Q6PIY5 440 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 CAPN12Q6ZSI9 719 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 C3orf62Q6ZUJ4 267 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP14.59□□□□□ -0.07
HMGA1-203ENST00000374116 ARL14EPQ8N8R7 260 aaPredicted RBP14.59□□□□□ -0.07
HMGA1-203ENST00000374116 FBXO36Q8NEA4 188 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 GDAP1Q8TB36 358 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 NT5C3BQ969T7 300 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 TMEM237Q96Q45 408 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 SLC46A2Q9BY10 475 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 RNF38Q9H0F5 515 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 ACSS3Q9H6R3 686 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 USP29Q9HBJ7 922 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 MLXIPLQ9NP71 852 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 SSU72Q9NP77 194 aaKnown RBP14.59□□□□□ -0.07
HMGA1-203ENST00000374116 FGFR1OP2Q9NVK5 253 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.59□□□□□ -0.07
HMGA1-203ENST00000374116 UXTQ9UBK9 157 aaPredicted RBP14.59□□□□□ -0.07
HMGA1-203ENST00000374116 SCML2Q9UQR0 700 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 TCRBV7S3A2A0A539 114 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 FAM92AA1XBS5 289 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 BCLAF3A2AJT9 711 aaKnown RBP14.59□□□□□ -0.07
HMGA1-203ENST00000374116 C2CD4DB7Z1M9 353 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 SCAMP3O14828 347 aaKnown RBP14.59□□□□□ -0.07
HMGA1-203ENST00000374116 BANF1O75531 89 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 POU2F2P09086 479 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 GSTA2P09210 222 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 CDC25CP30307 473 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 DAOAP59103 153 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 CUL3Q13618 768 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 KCNJ11Q14654 390 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 BBS9Q3SYG4 887 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 EFHC1Q5JVL4 640 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 IRGCQ6NXR0 463 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 C4orf22Q6V702 233 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 STRADAQ7RTN6 431 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 ARHGAP22Q7Z5H3 698 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 PCDH19Q8TAB3 1148 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 DENND1AQ8TEH3 1009 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 FAM149B1Q96BN6 582 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 GRAMD1AQ96CP6 724 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 DHRS4Q9BTZ2 278 aa14.59□□□□□ -0.07
HMGA1-203ENST00000374116 LRMDAQ9H2I8 198 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms