RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 SLC25A52Q3SY17 297 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 TMEM259Q4ZIN3 620 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 ZNF618Q5T7W0 954 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 IFNLR1Q8IU57 520 aaPredicted RBP16.66■□□□□ 0.26
SDC4-201ENST00000372733 TMEM151AQ8N4L1 468 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 CPSF7Q8N684 471 aaKnown RBP16.66■□□□□ 0.26
SDC4-201ENST00000372733 UNKQ9C0B0 810 aaKnown RBP16.66■□□□□ 0.26
SDC4-201ENST00000372733 ZBTB26Q9HCK0 441 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 SNTG2Q9NY99 539 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 COPG1Q9Y678 874 aaKnown RBP16.66■□□□□ 0.26
SDC4-201ENST00000372733 FAM72CH0Y354 149 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 EEF2KO00418 725 aaKnown RBP16.66■□□□□ 0.26
SDC4-201ENST00000372733 ACOT8O14734 319 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 STRNO43815 780 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 TKTP29401 623 aaKnown RBP16.66■□□□□ 0.26
SDC4-201ENST00000372733 DPYSQ14117 519 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 NRF1Q16656 503 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 KYAT1Q16773 422 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 FAM72AQ5TYM5 149 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 FAM72DQ6L9T8 149 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 GADL1Q6ZQY3 521 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 SETD3Q86TU7 594 aaPredicted RBP16.66■□□□□ 0.26
SDC4-201ENST00000372733 FAM72BQ86X60 149 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 TMEM126BQ8IUX1 230 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 LSMEM2Q8N112 164 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 TMEM102Q8N9M5 508 aaPredicted RBP16.66■□□□□ 0.26
SDC4-201ENST00000372733 MLPHQ9BV36 600 aaPredicted RBP16.66■□□□□ 0.26
SDC4-201ENST00000372733 C1QTNF1Q9BXJ1 281 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 PRDM16Q9HAZ2 1276 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 CASS4Q9NQ75 786 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 LMCD1Q9NZU5 365 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 PLXNA1Q9UIW2 1896 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 ZBTB24O43167 697 aaPredicted RBP16.66■□□□□ 0.26
SDC4-201ENST00000372733 SLC5A2P31639 672 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 SCNN1AP37088 669 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 POU5F1BQ06416 359 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 PRKAA1Q13131 559 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 MYBPC3Q14896 1274 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 PAFAH1B3Q15102 231 aaKnown RBP16.66■□□□□ 0.26
SDC4-201ENST00000372733 CYTH1Q15438 398 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 DLK2Q6UY11 383 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 NT5DC4Q86YG4 428 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 LINC01465Q8N7H1 131 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 TRPM4Q8TD43 1214 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 DLG3Q92796 817 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 ATP6V1E2Q96A05 226 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 SLC2A11Q9BYW1 496 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 SETD4Q9NVD3 440 aa16.66■□□□□ 0.26
SDC4-201ENST00000372733 ZSWIM8A7E2V4 1837 aa16.65■□□□□ 0.26
SDC4-201ENST00000372733 TCAF2A6NFQ2 919 aa16.65■□□□□ 0.26
SDC4-201ENST00000372733 DCLK1O15075 740 aa16.65■□□□□ 0.26
SDC4-201ENST00000372733 FAM200BP0CF97 657 aa16.65■□□□□ 0.26
SDC4-201ENST00000372733 ARSAP15289 507 aa16.65■□□□□ 0.26
SDC4-201ENST00000372733 NELFEP18615 380 aaKnown RBP16.65■□□□□ 0.26
SDC4-201ENST00000372733 NMBRP28336 390 aa16.65■□□□□ 0.26
SDC4-201ENST00000372733 GRM5P41594 1212 aa16.65■□□□□ 0.26
SDC4-201ENST00000372733 CSE1LP55060 971 aaKnown RBP16.65■□□□□ 0.26
SDC4-201ENST00000372733 ZNF460Q14592 562 aa16.65■□□□□ 0.26
SDC4-201ENST00000372733 ANO4Q32M45 955 aa16.65■□□□□ 0.26
SDC4-201ENST00000372733 NOL9Q5SY16 702 aaKnown RBP16.65■□□□□ 0.26
SDC4-201ENST00000372733 IL23RQ5VWK5 629 aa16.65■□□□□ 0.26
SDC4-201ENST00000372733 GK5Q6ZS86 529 aa16.65■□□□□ 0.26
SDC4-201ENST00000372733 ZNF410Q86VK4 478 aa16.65■□□□□ 0.26
SDC4-201ENST00000372733 UNC93AQ86WB7 457 aa16.65■□□□□ 0.26
SDC4-201ENST00000372733 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.65■□□□□ 0.26
SDC4-201ENST00000372733 PHF12Q96QT6 1004 aa16.65■□□□□ 0.26
SDC4-201ENST00000372733 MCMBPQ9BTE3 642 aa16.65■□□□□ 0.26
SDC4-201ENST00000372733 IL22Q9GZX6 179 aa16.65■□□□□ 0.26
SDC4-201ENST00000372733 SEMA6AQ9H2E6 1030 aa16.65■□□□□ 0.26
SDC4-201ENST00000372733 UBP1Q9NZI7 540 aa16.65■□□□□ 0.26
SDC4-201ENST00000372733 BCAP29Q9UHQ4 241 aa16.65■□□□□ 0.26
SDC4-201ENST00000372733 MID2Q9UJV3 735 aa16.65■□□□□ 0.26
SDC4-201ENST00000372733 TLK1Q9UKI8 766 aa16.65■□□□□ 0.26
SDC4-201ENST00000372733 M0QYT0 321 aa16.65■□□□□ 0.26
SDC4-201ENST00000372733 ZNF286BP0CG31 522 aa16.65■□□□□ 0.26
SDC4-201ENST00000372733 FGFR3P22607 806 aa16.65■□□□□ 0.26
SDC4-201ENST00000372733 CD68P34810 354 aaPredicted RBP16.65■□□□□ 0.26
SDC4-201ENST00000372733 VGLL4Q14135 290 aa16.65■□□□□ 0.26
SDC4-201ENST00000372733 HERC3Q15034 1050 aa16.65■□□□□ 0.26
SDC4-201ENST00000372733 USP41Q3LFD5 358 aa16.65■□□□□ 0.26
SDC4-201ENST00000372733 PIGZQ86VD9 579 aa16.65■□□□□ 0.26
SDC4-201ENST00000372733 APOBEC3FQ8IUX4 373 aaKnown RBP16.65■□□□□ 0.26
SDC4-201ENST00000372733 SPATA6LQ8N4H0 392 aa16.65■□□□□ 0.26
SDC4-201ENST00000372733 SUDS3Q9H7L9 328 aaPredicted RBP16.65■□□□□ 0.26
SDC4-201ENST00000372733 EFCAB1Q9HAE3 211 aa16.65■□□□□ 0.26
SDC4-201ENST00000372733 PIGVQ9NUD9 493 aa16.65■□□□□ 0.26
SDC4-201ENST00000372733 ADA2Q9NZK5 511 aa16.65■□□□□ 0.26
SDC4-201ENST00000372733 H3BSA7 217 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 CSPG5O95196 566 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 LGALS2P05162 132 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 CDK4P11802 303 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 HSPA13P48723 471 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 ZBTB17Q13105 803 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 PTK2BQ14289 1009 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 USP10Q14694 798 aaKnown RBP16.64■□□□□ 0.25
SDC4-201ENST00000372733 EML3Q32P44 896 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 ZNF484Q5JVG2 852 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 SYPL2Q5VXT5 272 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 SLC41A1Q8IVJ1 513 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 PCDH20Q8N6Y1 951 aaKnown RBP16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms