RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 MARCH8Q5T0T0 291 aa12.35□□□□□ -0.43
CLIP3-201ENST00000360535 JADE3Q92613 823 aa12.35□□□□□ -0.43
CLIP3-201ENST00000360535 WNT8BQ93098 351 aa12.35□□□□□ -0.43
CLIP3-201ENST00000360535 MPP4Q96JB8 637 aa12.35□□□□□ -0.43
CLIP3-201ENST00000360535 NDNQ99608 321 aa12.35□□□□□ -0.43
CLIP3-201ENST00000360535 GORASP1Q9BQQ3 440 aa12.35□□□□□ -0.43
CLIP3-201ENST00000360535 SIKE1Q9BRV8 207 aa12.35□□□□□ -0.43
CLIP3-201ENST00000360535 C11orf84Q9BUA3 381 aaPredicted RBP12.35□□□□□ -0.43
CLIP3-201ENST00000360535 NUDT5Q9UKK9 219 aa12.35□□□□□ -0.43
CLIP3-201ENST00000360535 ASB14A6NK59 587 aa12.34□□□□□ -0.43
CLIP3-201ENST00000360535 I6L893 689 aaPredicted RBP12.34□□□□□ -0.43
CLIP3-201ENST00000360535 DYNC1LI2O43237 492 aaPredicted RBP12.34□□□□□ -0.43
CLIP3-201ENST00000360535 PMPCBO75439 489 aa12.34□□□□□ -0.43
CLIP3-201ENST00000360535 NOS2P35228 1153 aa12.34□□□□□ -0.43
CLIP3-201ENST00000360535 LAMB3Q13751 1172 aa12.34□□□□□ -0.43
CLIP3-201ENST00000360535 ARHGAP17Q68EM7 881 aa12.34□□□□□ -0.43
CLIP3-201ENST00000360535 NOTUMQ6P988 496 aa12.34□□□□□ -0.43
CLIP3-201ENST00000360535 UNC93AQ86WB7 457 aa12.34□□□□□ -0.43
CLIP3-201ENST00000360535 NXNL1Q96CM4 212 aa12.34□□□□□ -0.43
CLIP3-201ENST00000360535 MLPHQ9BV36 600 aaPredicted RBP12.34□□□□□ -0.43
CLIP3-201ENST00000360535 FAM96AQ9H5X1 160 aa12.34□□□□□ -0.43
CLIP3-201ENST00000360535 PLEKHA5Q9HAU0 1116 aa12.34□□□□□ -0.43
CLIP3-201ENST00000360535 ETAA1Q9NY74 926 aa12.34□□□□□ -0.43
CLIP3-201ENST00000360535 XPR1Q9UBH6 696 aa12.34□□□□□ -0.43
CLIP3-201ENST00000360535 DNAJB4Q9UDY4 337 aa12.34□□□□□ -0.43
CLIP3-201ENST00000360535 UBQLN1Q9UMX0 589 aaKnown RBP12.34□□□□□ -0.43
CLIP3-201ENST00000360535 BPTFQ12830 3046 aa12.34□□□□□ -0.43
CLIP3-201ENST00000360535 A0A0G2JLL6 359 aaPredicted RBP12.34□□□□□ -0.43
CLIP3-201ENST00000360535 RGSL1A5PLK6 1076 aa12.34□□□□□ -0.43
CLIP3-201ENST00000360535 HDAC3O15379 428 aa12.34□□□□□ -0.43
CLIP3-201ENST00000360535 CD68P34810 354 aaPredicted RBP12.34□□□□□ -0.43
CLIP3-201ENST00000360535 ADRA1BP35368 520 aa12.34□□□□□ -0.43
CLIP3-201ENST00000360535 CDK18Q07002 472 aa12.34□□□□□ -0.43
CLIP3-201ENST00000360535 PCSK7Q16549 785 aa12.34□□□□□ -0.43
CLIP3-201ENST00000360535 KYAT1Q16773 422 aa12.34□□□□□ -0.43
CLIP3-201ENST00000360535 INSCQ1MX18 579 aa12.34□□□□□ -0.43
CLIP3-201ENST00000360535 C11orf91Q3C1V1 193 aa12.34□□□□□ -0.43
CLIP3-201ENST00000360535 OTUD1Q5VV17 481 aaPredicted RBP12.34□□□□□ -0.43
CLIP3-201ENST00000360535 TAPT1Q6NXT6 567 aa12.34□□□□□ -0.43
CLIP3-201ENST00000360535 CYP2R1Q6VVX0 501 aa12.34□□□□□ -0.43
CLIP3-201ENST00000360535 RBM44Q6ZP01 1051 aaKnown RBP12.34□□□□□ -0.43
CLIP3-201ENST00000360535 ARHGAP36Q6ZRI8 547 aa12.34□□□□□ -0.43
CLIP3-201ENST00000360535 GK5Q6ZS86 529 aa12.34□□□□□ -0.43
CLIP3-201ENST00000360535 PRRT2Q7Z6L0 340 aaPredicted RBP12.34□□□□□ -0.43
CLIP3-201ENST00000360535 FSTL5Q8N475 847 aaPredicted RBP12.34□□□□□ -0.43
CLIP3-201ENST00000360535 OR6J1Q8NGC5 347 aa12.34□□□□□ -0.43
CLIP3-201ENST00000360535 TNIP3Q96KP6 325 aa12.34□□□□□ -0.43
CLIP3-201ENST00000360535 SERPINI1Q99574 410 aa12.34□□□□□ -0.43
CLIP3-201ENST00000360535 RTKNQ9BST9 563 aa12.34□□□□□ -0.43
CLIP3-201ENST00000360535 PCDHAC1Q9H158 963 aa12.34□□□□□ -0.43
CLIP3-201ENST00000360535 STN1Q9H668 368 aaKnown RBP12.34□□□□□ -0.43
CLIP3-201ENST00000360535 WDR41Q9HAD4 459 aa12.34□□□□□ -0.43
CLIP3-201ENST00000360535 VCX3AQ9NNX9 186 aa12.34□□□□□ -0.43
CLIP3-201ENST00000360535 DNAJC25-GNG10A0A024R161 153 aa12.33□□□□□ -0.43
CLIP3-201ENST00000360535 AP2A1O95782 977 aa12.33□□□□□ -0.43
CLIP3-201ENST00000360535 CYP2C9P11712 490 aa12.33□□□□□ -0.43
CLIP3-201ENST00000360535 YBX3P16989 372 aaKnown RBP eCLIP12.33□□□□□ -0.43
CLIP3-201ENST00000360535 GLUD2P49448 558 aa12.33□□□□□ -0.43
CLIP3-201ENST00000360535 NME5P56597 212 aa12.33□□□□□ -0.43
CLIP3-201ENST00000360535 DGKDQ16760 1214 aa12.33□□□□□ -0.43
CLIP3-201ENST00000360535 SLC5A9Q2M3M2 681 aa12.33□□□□□ -0.43
CLIP3-201ENST00000360535 DCAF4L1Q3SXM0 396 aa12.33□□□□□ -0.43
CLIP3-201ENST00000360535 SH2D4BQ5SQS7 431 aa12.33□□□□□ -0.43
CLIP3-201ENST00000360535 GPRIN1Q7Z2K8 1008 aa12.33□□□□□ -0.43
CLIP3-201ENST00000360535 KBTBD6Q86V97 674 aa12.33□□□□□ -0.43
CLIP3-201ENST00000360535 ERO1BQ86YB8 467 aa12.33□□□□□ -0.43
CLIP3-201ENST00000360535 TTC16Q8NEE8 873 aa12.33□□□□□ -0.43
CLIP3-201ENST00000360535 NAT14Q8WUY8 206 aa12.33□□□□□ -0.43
CLIP3-201ENST00000360535 EXT2Q93063 718 aa12.33□□□□□ -0.43
CLIP3-201ENST00000360535 ELMO2Q96JJ3 720 aa12.33□□□□□ -0.43
CLIP3-201ENST00000360535 UBAP1Q9NZ09 502 aa12.33□□□□□ -0.43
CLIP3-201ENST00000360535 CDYLQ9Y232 598 aa12.33□□□□□ -0.43
CLIP3-201ENST00000360535 LZTS1Q9Y250 596 aa12.33□□□□□ -0.43
CLIP3-201ENST00000360535 PAPPA2Q9BXP8 1791 aa12.33□□□□□ -0.44
CLIP3-201ENST00000360535 CLPTM1O96005 669 aa12.33□□□□□ -0.44
CLIP3-201ENST00000360535 ATP5BP06576 529 aaKnown RBP12.33□□□□□ -0.44
CLIP3-201ENST00000360535 NPR3P17342 541 aa12.33□□□□□ -0.44
CLIP3-201ENST00000360535 PTPN1P18031 435 aaKnown RBP12.33□□□□□ -0.44
CLIP3-201ENST00000360535 CCNA1P78396 465 aa12.33□□□□□ -0.44
CLIP3-201ENST00000360535 CEACAM7Q14002 265 aa12.33□□□□□ -0.44
CLIP3-201ENST00000360535 STXBP5Q5T5C0 1151 aa12.33□□□□□ -0.44
CLIP3-201ENST00000360535 TWF2Q6IBS0 349 aaKnown RBP12.33□□□□□ -0.44
CLIP3-201ENST00000360535 NLGN2Q8NFZ4 835 aa12.33□□□□□ -0.44
CLIP3-201ENST00000360535 TMEM40Q8WWA1 233 aa12.33□□□□□ -0.44
CLIP3-201ENST00000360535 PHF21BQ96EK2 531 aa12.33□□□□□ -0.44
CLIP3-201ENST00000360535 HSFY1Q96LI6 401 aa12.33□□□□□ -0.44
CLIP3-201ENST00000360535 PHF12Q96QT6 1004 aa12.33□□□□□ -0.44
CLIP3-201ENST00000360535 UBE2OQ9C0C9 1292 aaKnown RBP12.33□□□□□ -0.44
CLIP3-201ENST00000360535 TKTL2Q9H0I9 626 aa12.33□□□□□ -0.44
CLIP3-201ENST00000360535 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.33□□□□□ -0.44
CLIP3-201ENST00000360535 AP4B1Q9Y6B7 739 aa12.33□□□□□ -0.44
CLIP3-201ENST00000360535 TLL2Q9Y6L7 1015 aa12.33□□□□□ -0.44
CLIP3-201ENST00000360535 ATP6AP2A0A1C7CYW4 349 aa12.33□□□□□ -0.44
CLIP3-201ENST00000360535 MEIS3P2A8K0S8 358 aa12.33□□□□□ -0.44
CLIP3-201ENST00000360535 ATP6AP2O75787 350 aa12.33□□□□□ -0.44
CLIP3-201ENST00000360535 RTN3O95197 1032 aaPredicted RBP12.33□□□□□ -0.44
CLIP3-201ENST00000360535 RALGDSQ12967 914 aa12.33□□□□□ -0.44
CLIP3-201ENST00000360535 NOMO2Q5JPE7 1267 aa12.33□□□□□ -0.44
CLIP3-201ENST00000360535 RARS2Q5T160 578 aaKnown RBP12.33□□□□□ -0.44
CLIP3-201ENST00000360535 PKP2Q99959 881 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms