RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 CHD5Q8TDI0 1954 aa16.23■□□□□ 0.19
CCDC28A-201ENST00000332797 NYNRINQ9P2P1 1898 aaKnown RBP16.23■□□□□ 0.19
CCDC28A-201ENST00000332797 TARSL2A2RTX5 802 aaKnown RBP16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 ARHGAP42A6NI28 874 aa16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 PSTPIP1O43586 416 aa16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 HRO43593 1189 aa16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 RPP40O75818 363 aaKnown RBP16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 KDELR1P24390 212 aa16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 NBL1P41271 181 aa16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 PAPOLAP51003 745 aaKnown RBP16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 CLCN6P51797 869 aa16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 GEMIN4P57678 1058 aaKnown RBP16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 SLC20A2Q08357 652 aa16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 IFI16Q16666 785 aaKnown RBP16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 USP39Q53GS9 565 aaKnown RBP16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 ANKRD20A8PQ5CZ79 823 aa16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 C22orf39Q6P5X5 142 aa16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 CEP68Q76N32 757 aa16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 ARHGAP12Q8IWW6 846 aa16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 LZTR1Q8N653 840 aa16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 GAB3Q8WWW8 586 aa16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 PRCCQ92733 491 aaPredicted RBP16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 PTPRN2Q92932 1015 aa16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 SIPA1Q96FS4 1042 aa16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 DDX56Q9NY93 547 aaKnown RBP16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 CACNA1HO95180 2353 aa16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 FANCMQ8IYD8 2048 aa16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 EML5Q05BV3 1969 aa16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 ZSCAN5CA6NGD5 496 aaPredicted RBP16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 RNASEH1O60930 286 aaKnown RBP16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 CNR2P34972 360 aa16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 SERPINB6P35237 376 aa16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 AFMIDQ63HM1 303 aa16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 ZNF776Q68DI1 518 aaPredicted RBP16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 TP53INP2Q8IXH6 220 aa16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 STK40Q8N2I9 435 aa16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 PCDH19Q8TAB3 1148 aa16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 RLN3Q8WXF3 142 aa16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 SPACA7Q96KW9 195 aa16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 PHOX2BQ99453 314 aa16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 TSGA10Q9BZW7 698 aa16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 TNKS2Q9H2K2 1166 aa16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 CYP8B1Q9UNU6 501 aa16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 FCF1Q9Y324 198 aaKnown RBP16.22■□□□□ 0.19
CCDC28A-201ENST00000332797 GRID2IPA4D2P6 1211 aa16.21■□□□□ 0.19
CCDC28A-201ENST00000332797 CD160O95971 181 aa16.21■□□□□ 0.19
CCDC28A-201ENST00000332797 CCDC175P0C221 793 aa16.21■□□□□ 0.19
CCDC28A-201ENST00000332797 ACADMP11310 421 aa16.21■□□□□ 0.19
CCDC28A-201ENST00000332797 MARCKSL1P49006 195 aa16.21■□□□□ 0.19
CCDC28A-201ENST00000332797 DNA2P51530 1060 aa16.21■□□□□ 0.19
CCDC28A-201ENST00000332797 RPS14P62263 151 aaKnown RBP16.21■□□□□ 0.19
CCDC28A-201ENST00000332797 SIM2Q14190 667 aaPredicted RBP16.21■□□□□ 0.19
CCDC28A-201ENST00000332797 ELAVL3Q14576 367 aaKnown RBP16.21■□□□□ 0.19
CCDC28A-201ENST00000332797 PRR23BQ6ZRT6 265 aa16.21■□□□□ 0.19
CCDC28A-201ENST00000332797 MMAAQ8IVH4 418 aaKnown RBP16.21■□□□□ 0.19
CCDC28A-201ENST00000332797 FAM160A2Q8N612 972 aaPredicted RBP16.21■□□□□ 0.19
CCDC28A-201ENST00000332797 LRRC57Q8N9N7 239 aa16.21■□□□□ 0.19
CCDC28A-201ENST00000332797 KIAA1524Q8TCG1 905 aa16.21■□□□□ 0.19
CCDC28A-201ENST00000332797 OR8D1Q8WZ84 308 aa16.21■□□□□ 0.19
CCDC28A-201ENST00000332797 RNF25Q96BH1 459 aaPredicted RBP16.21■□□□□ 0.19
CCDC28A-201ENST00000332797 PDLIM2Q96JY6 352 aa16.21■□□□□ 0.19
CCDC28A-201ENST00000332797 CCDC114Q96M63 670 aa16.21■□□□□ 0.19
CCDC28A-201ENST00000332797 RSPH9Q9H1X1 276 aaPredicted RBP16.21■□□□□ 0.19
CCDC28A-201ENST00000332797 CD93Q9NPY3 652 aa16.21■□□□□ 0.19
CCDC28A-201ENST00000332797 CXorf51AA0A1B0GTR3 108 aa16.2■□□□□ 0.18
CCDC28A-201ENST00000332797 C3orf70A6NLC5 250 aaPredicted RBP16.2■□□□□ 0.18
CCDC28A-201ENST00000332797 J3KR12 359 aa16.2■□□□□ 0.18
CCDC28A-201ENST00000332797 KRT86O43790 486 aa16.2■□□□□ 0.18
CCDC28A-201ENST00000332797 MFSD11O43934 449 aa16.2■□□□□ 0.18
CCDC28A-201ENST00000332797 PRAMEF11O60813 436 aa16.2■□□□□ 0.18
CCDC28A-201ENST00000332797 ZNF217O75362 1048 aa16.2■□□□□ 0.18
CCDC28A-201ENST00000332797 PALMO75781 387 aa16.2■□□□□ 0.18
CCDC28A-201ENST00000332797 DNTTP04053 509 aa16.2■□□□□ 0.18
CCDC28A-201ENST00000332797 P2RY2P41231 377 aa16.2■□□□□ 0.18
CCDC28A-201ENST00000332797 PSMD8P48556 350 aa16.2■□□□□ 0.18
CCDC28A-201ENST00000332797 BYSLQ13895 437 aaKnown RBP16.2■□□□□ 0.18
CCDC28A-201ENST00000332797 NCBP2-AS2Q69YL0 99 aa16.2■□□□□ 0.18
CCDC28A-201ENST00000332797 ARHGAP36Q6ZRI8 547 aa16.2■□□□□ 0.18
CCDC28A-201ENST00000332797 PQLC3Q8N755 202 aa16.2■□□□□ 0.18
CCDC28A-201ENST00000332797 FRMD1Q8N878 549 aa16.2■□□□□ 0.18
CCDC28A-201ENST00000332797 KRT35Q92764 455 aa16.2■□□□□ 0.18
CCDC28A-201ENST00000332797 FAF2Q96CS3 445 aa16.2■□□□□ 0.18
CCDC28A-201ENST00000332797 FAM129BQ96TA1 746 aa16.2■□□□□ 0.18
CCDC28A-201ENST00000332797 CEP44Q9C0F1 390 aa16.2■□□□□ 0.18
CCDC28A-201ENST00000332797 EPC1Q9H2F5 836 aa16.2■□□□□ 0.18
CCDC28A-201ENST00000332797 SP110Q9HB58 689 aa16.2■□□□□ 0.18
CCDC28A-201ENST00000332797 UBA2Q9UBT2 640 aaPredicted RBP16.2■□□□□ 0.18
CCDC28A-201ENST00000332797 GUCA1BQ9UMX6 200 aa16.2■□□□□ 0.18
CCDC28A-201ENST00000332797 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.2■□□□□ 0.18
CCDC28A-201ENST00000332797 FARP1Q9Y4F1 1045 aaPredicted RBP16.2■□□□□ 0.18
CCDC28A-201ENST00000332797 DMDP11532 3685 aa16.2■□□□□ 0.18
CCDC28A-201ENST00000332797 VPS13AQ96RL7 3174 aa16.19■□□□□ 0.18
CCDC28A-201ENST00000332797 ZNF821O75541 412 aaPredicted RBP16.19■□□□□ 0.18
CCDC28A-201ENST00000332797 TMCC1O94876 653 aa16.19■□□□□ 0.18
CCDC28A-201ENST00000332797 RECQLP46063 649 aaPredicted RBP16.19■□□□□ 0.18
CCDC28A-201ENST00000332797 CST6Q15828 149 aa16.19■□□□□ 0.18
CCDC28A-201ENST00000332797 LPAL2Q16609 132 aa16.19■□□□□ 0.18
CCDC28A-201ENST00000332797 MAP7D1Q3KQU3 841 aa16.19■□□□□ 0.18
CCDC28A-201ENST00000332797 MFSD7Q6UXD7 560 aa16.19■□□□□ 0.18
CCDC28A-201ENST00000332797 DSG4Q86SJ6 1040 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms