RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 AGGF1Q8N302 714 aaeCLIP14.38□□□□□ -0.11
SS18-201ENST00000269137 FBXO36Q8NEA4 188 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 UHMK1Q8TAS1 419 aaKnown RBP14.38□□□□□ -0.11
SS18-201ENST00000269137 SH3RF2Q8TEC5 729 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 USP33Q8TEY7 942 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 NSMCE1Q8WV22 266 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 SIGLEC10Q96LC7 697 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 CCDC77Q9BR77 488 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 MLPHQ9BV36 600 aaPredicted RBP14.38□□□□□ -0.11
SS18-201ENST00000269137 GOLGA6AQ9NYA3 693 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 AAR2Q9Y312 384 aaKnown RBP14.38□□□□□ -0.11
SS18-201ENST00000269137 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.38□□□□□ -0.11
SS18-201ENST00000269137 A0A0D9SEW6 157 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 TYW5A2RUC4 315 aaKnown RBP14.38□□□□□ -0.11
SS18-201ENST00000269137 F5H423 210 aaPredicted RBP14.38□□□□□ -0.11
SS18-201ENST00000269137 TBL1XO60907 577 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 RNF40O75150 1001 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 SPAG6O75602 509 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 ANXA9O76027 345 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 HLA-DQB2P05538 268 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 RHOCP08134 193 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 HOXD9P28356 352 aaPredicted RBP14.38□□□□□ -0.11
SS18-201ENST00000269137 GRIA1P42261 906 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 GPX6P59796 221 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 NTHL1P78549 312 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 KRT71Q3SY84 523 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 RNF43Q68DV7 783 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 CXorf57Q6NSI4 855 aaKnown RBP14.38□□□□□ -0.11
SS18-201ENST00000269137 OTOP3Q7RTS5 596 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 IGDCC3Q8IVU1 814 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 BBS7Q8IWZ6 715 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 PALM2Q8IXS6 379 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 OR52K2Q8NGK3 314 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 MRPL38Q96DV4 380 aaKnown RBP14.38□□□□□ -0.11
SS18-201ENST00000269137 ACE2Q9BYF1 805 aaPredicted RBP14.38□□□□□ -0.11
SS18-201ENST00000269137 LRRC40Q9H9A6 602 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 PDFQ9HBH1 243 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 TDP1Q9NUW8 608 aa14.38□□□□□ -0.11
SS18-201ENST00000269137 RASGRF2O14827 1237 aa14.37□□□□□ -0.11
SS18-201ENST00000269137 KDELR3O43731 214 aa14.37□□□□□ -0.11
SS18-201ENST00000269137 TCF3P15923 654 aa14.37□□□□□ -0.11
SS18-201ENST00000269137 PHBP35232 272 aa14.37□□□□□ -0.11
SS18-201ENST00000269137 SLC10A7Q0GE19 358 aa14.37□□□□□ -0.11
SS18-201ENST00000269137 TTMPQ5BVD1 217 aa14.37□□□□□ -0.11
SS18-201ENST00000269137 TMCO4Q5TGY1 634 aa14.37□□□□□ -0.11
SS18-201ENST00000269137 AGBL2Q5U5Z8 902 aa14.37□□□□□ -0.11
SS18-201ENST00000269137 ZNF354CQ86Y25 554 aa14.37□□□□□ -0.11
SS18-201ENST00000269137 TDRD5Q8NAT2 981 aaKnown RBP14.37□□□□□ -0.11
SS18-201ENST00000269137 OR7D4Q8NG98 312 aa14.37□□□□□ -0.11
SS18-201ENST00000269137 SMG7Q92540 1137 aaKnown RBP14.37□□□□□ -0.11
SS18-201ENST00000269137 USP13Q92995 863 aaPredicted RBP14.37□□□□□ -0.11
SS18-201ENST00000269137 PPP2R3CQ969Q6 453 aa14.37□□□□□ -0.11
SS18-201ENST00000269137 PGM2Q96G03 612 aa14.37□□□□□ -0.11
SS18-201ENST00000269137 OXNAD1Q96HP4 312 aaPredicted RBP14.37□□□□□ -0.11
SS18-201ENST00000269137 SLC25A51Q9H1U9 297 aa14.37□□□□□ -0.11
SS18-201ENST00000269137 SFXN1Q9H9B4 322 aa14.37□□□□□ -0.11
SS18-201ENST00000269137 VPS37BQ9H9H4 285 aa14.37□□□□□ -0.11
SS18-201ENST00000269137 DZANK1Q9NVP4 752 aa14.37□□□□□ -0.11
SS18-201ENST00000269137 CHMP2BQ9UQN3 213 aa14.37□□□□□ -0.11
SS18-201ENST00000269137 CCL26Q9Y258 94 aa14.37□□□□□ -0.11
SS18-201ENST00000269137 SDR42E2A6NKP2 422 aa14.36□□□□□ -0.11
SS18-201ENST00000269137 HMGB1P1B2RPK0 211 aaPredicted RBP14.36□□□□□ -0.11
SS18-201ENST00000269137 SCAMP3O14828 347 aaKnown RBP14.36□□□□□ -0.11
SS18-201ENST00000269137 NEBLO76041 1014 aa14.36□□□□□ -0.11
SS18-201ENST00000269137 LUC7L3O95232 432 aaKnown RBP14.36□□□□□ -0.11
SS18-201ENST00000269137 IVLP07476 585 aa14.36□□□□□ -0.11
SS18-201ENST00000269137 GSTA2P09210 222 aa14.36□□□□□ -0.11
SS18-201ENST00000269137 MMP13P45452 471 aa14.36□□□□□ -0.11
SS18-201ENST00000269137 DMTNQ08495 405 aa14.36□□□□□ -0.11
SS18-201ENST00000269137 MTM1Q13496 603 aa14.36□□□□□ -0.11
SS18-201ENST00000269137 LBRQ14739 615 aaKnown RBP14.36□□□□□ -0.11
SS18-201ENST00000269137 TERF2Q15554 542 aa14.36□□□□□ -0.11
SS18-201ENST00000269137 MPPE1Q53F39 396 aa14.36□□□□□ -0.11
SS18-201ENST00000269137 C3orf62Q6ZUJ4 267 aa14.36□□□□□ -0.11
SS18-201ENST00000269137 TDHQ8IZJ6 230 aa14.36□□□□□ -0.11
SS18-201ENST00000269137 VN1R2Q8NFZ6 395 aa14.36□□□□□ -0.11
SS18-201ENST00000269137 PABPC5Q96DU9 382 aaKnown RBP14.36□□□□□ -0.11
SS18-201ENST00000269137 ATP6V1G3Q96LB4 118 aa14.36□□□□□ -0.11
SS18-201ENST00000269137 EBNA1BP2Q99848 306 aaKnown RBP14.36□□□□□ -0.11
SS18-201ENST00000269137 SMG9Q9H0W8 520 aaKnown RBP14.36□□□□□ -0.11
SS18-201ENST00000269137 PPCSQ9HAB8 311 aa14.36□□□□□ -0.11
SS18-201ENST00000269137 PIDD1Q9HB75 910 aa14.36□□□□□ -0.11
SS18-201ENST00000269137 CASS4Q9NQ75 786 aa14.36□□□□□ -0.11
SS18-201ENST00000269137 MRPS23Q9Y3D9 190 aaKnown RBP14.36□□□□□ -0.11
SS18-201ENST00000269137 AP3B1O00203 1094 aa14.36□□□□□ -0.11
SS18-201ENST00000269137 WEE1P30291 646 aa14.36□□□□□ -0.11
SS18-201ENST00000269137 SSTR1P30872 391 aa14.36□□□□□ -0.11
SS18-201ENST00000269137 GEMP55040 296 aa14.36□□□□□ -0.11
SS18-201ENST00000269137 OXCT1P55809 520 aa14.36□□□□□ -0.11
SS18-201ENST00000269137 RFTN1Q14699 578 aaPredicted RBP14.36□□□□□ -0.11
SS18-201ENST00000269137 IL31Q6EBC2 164 aa14.36□□□□□ -0.11
SS18-201ENST00000269137 NAPEPLDQ6IQ20 393 aa14.36□□□□□ -0.11
SS18-201ENST00000269137 LINC00523Q86TU6 105 aa14.36□□□□□ -0.11
SS18-201ENST00000269137 C12orf76Q8N812 135 aaPredicted RBP14.36□□□□□ -0.11
SS18-201ENST00000269137 TIFAQ96CG3 184 aa14.36□□□□□ -0.11
SS18-201ENST00000269137 IMP4Q96G21 291 aaKnown RBP14.36□□□□□ -0.11
SS18-201ENST00000269137 NAT9Q9BTE0 207 aa14.36□□□□□ -0.11
SS18-201ENST00000269137 FETUBQ9UGM5 382 aa14.36□□□□□ -0.11
SS18-201ENST00000269137 ZC3H7BQ9UGR2 993 aaKnown RBP14.36□□□□□ -0.11
SS18-201ENST00000269137 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms