RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 COX4I2Q96KJ9 171 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 MSRAQ9UJ68 235 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 SNCAIPQ9Y6H5 919 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 SAMD9Q5K651 1589 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 TNFAIP8O95379 198 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 BMP7P18075 431 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 CLCN3P51790 818 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 RCAN1P53805 252 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 CASP9P55211 416 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 BMPR2Q13873 1038 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 RAP1GAP2Q684P5 730 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 ZNF470Q6ECI4 717 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 APBA2Q99767 749 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 TRMT13Q9NUP7 481 aaKnown RBP11.53□□□□□ -0.56
PTPN4-201ENST00000263708 ATP5BP06576 529 aaKnown RBP11.53□□□□□ -0.56
PTPN4-201ENST00000263708 PRKAR1AP10644 381 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 CRABP2P29373 138 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 LRPAP1P30533 357 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 OFCC1Q8IZS5 231 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 BPIFB6Q8NFQ5 453 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 ZFRQ96KR1 1074 aaKnown RBP11.53□□□□□ -0.56
PTPN4-201ENST00000263708 CCNB2O95067 398 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 NCK1P16333 377 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 FAM187BQ17R55 369 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 C12orf4Q9NQ89 552 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 ANGPT4Q9Y264 503 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 DHRS7Q9Y394 339 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 VDRP11473 427 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 GALNT3Q14435 633 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 RNF148Q8N7C7 305 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 PHF10Q8WUB8 498 aaKnown RBP11.53□□□□□ -0.56
PTPN4-201ENST00000263708 ANKRD6Q9Y2G4 727 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 TMEM253P0C7T8 217 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 PACS2Q86VP3 889 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 JAZF1Q86VZ6 243 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 ANKFN1Q8N957 763 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 GPR156Q8NFN8 814 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 DCLRE1BQ9H816 532 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 ABCB10Q9NRK6 738 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 A0A1W2PQ72 361 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 GAS2O43903 313 aaKnown RBP11.53□□□□□ -0.56
PTPN4-201ENST00000263708 TMCC2O75069 709 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 FAIM2Q9BWQ8 316 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 DNAJC5BQ9UF47 199 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 SSU72P8A0A1W2PR75 194 aa11.52□□□□□ -0.56
PTPN4-201ENST00000263708 SUPT20HL2P0C7V6 817 aa11.52□□□□□ -0.56
PTPN4-201ENST00000263708 SPIBQ01892 262 aa11.52□□□□□ -0.56
PTPN4-201ENST00000263708 KCNA10Q16322 511 aa11.52□□□□□ -0.56
PTPN4-201ENST00000263708 OR10H5Q8NGA6 315 aa11.52□□□□□ -0.56
PTPN4-201ENST00000263708 TSEN15Q8WW01 171 aaKnown RBP11.52□□□□□ -0.56
PTPN4-201ENST00000263708 SGCDQ92629 289 aa11.52□□□□□ -0.56
PTPN4-201ENST00000263708 TRAPPC9Q96Q05 1148 aa11.52□□□□□ -0.56
PTPN4-201ENST00000263708 FERD3LQ96RJ6 166 aa11.52□□□□□ -0.56
PTPN4-201ENST00000263708 SPATA5L1Q9BVQ7 753 aa11.52□□□□□ -0.56
PTPN4-201ENST00000263708 PXMP2Q9NR77 195 aa11.52□□□□□ -0.56
PTPN4-201ENST00000263708 SCTRP47872 440 aa11.52□□□□□ -0.56
PTPN4-201ENST00000263708 CDKL1Q00532 357 aa11.52□□□□□ -0.56
PTPN4-201ENST00000263708 PFKPQ01813 784 aa11.52□□□□□ -0.56
PTPN4-201ENST00000263708 MPZL3Q6UWV2 235 aa11.52□□□□□ -0.56
PTPN4-201ENST00000263708 PLEKHH3Q7Z736 793 aa11.52□□□□□ -0.56
PTPN4-201ENST00000263708 GSG1L2A8MUP6 293 aa11.52□□□□□ -0.57
PTPN4-201ENST00000263708 H0Y858 1186 aa11.52□□□□□ -0.57
PTPN4-201ENST00000263708 BPNT1O95861 308 aa11.52□□□□□ -0.57
PTPN4-201ENST00000263708 MBTD1Q05BQ5 628 aa11.52□□□□□ -0.57
PTPN4-201ENST00000263708 ARMC12Q5T9G4 340 aa11.52□□□□□ -0.57
PTPN4-201ENST00000263708 OVOS1Q6IE37 1185 aa11.52□□□□□ -0.57
PTPN4-201ENST00000263708 DEF8Q6ZN54 512 aa11.52□□□□□ -0.57
PTPN4-201ENST00000263708 METTL16Q86W50 562 aaKnown RBP11.52□□□□□ -0.57
PTPN4-201ENST00000263708 OR2L3Q8NG85 312 aa11.52□□□□□ -0.57
PTPN4-201ENST00000263708 ADAM32Q8TC27 787 aa11.52□□□□□ -0.57
PTPN4-201ENST00000263708 MARK4Q96L34 752 aa11.52□□□□□ -0.57
PTPN4-201ENST00000263708 POP1Q99575 1024 aaKnown RBP11.52□□□□□ -0.57
PTPN4-201ENST00000263708 CRNNQ9UBG3 495 aaPredicted RBP11.52□□□□□ -0.57
PTPN4-201ENST00000263708 A0A075B6Q4 140 aa11.52□□□□□ -0.57
PTPN4-201ENST00000263708 PPM1AP35813 382 aa11.52□□□□□ -0.57
PTPN4-201ENST00000263708 CES3Q6UWW8 571 aa11.52□□□□□ -0.57
PTPN4-201ENST00000263708 C8orf59Q8N0T1 100 aaPredicted RBP11.52□□□□□ -0.57
PTPN4-201ENST00000263708 AP3S1Q92572 193 aa11.52□□□□□ -0.57
PTPN4-201ENST00000263708 CST11Q9H112 138 aa11.52□□□□□ -0.57
PTPN4-201ENST00000263708 UXTQ9UBK9 157 aaPredicted RBP11.52□□□□□ -0.57
PTPN4-201ENST00000263708 PCDHB5Q9Y5E4 795 aa11.52□□□□□ -0.57
PTPN4-201ENST00000263708 MAGEB16A2A368 324 aa11.52□□□□□ -0.57
PTPN4-201ENST00000263708 SLC7A2P52569 658 aa11.52□□□□□ -0.57
PTPN4-201ENST00000263708 ACSM2AQ08AH3 577 aa11.52□□□□□ -0.57
PTPN4-201ENST00000263708 ACSM2BQ68CK6 577 aa11.52□□□□□ -0.57
PTPN4-201ENST00000263708 MB21D2Q8IYB1 491 aaPredicted RBP11.52□□□□□ -0.57
PTPN4-201ENST00000263708 CASKIN2Q8WXE0 1202 aa11.52□□□□□ -0.57
PTPN4-201ENST00000263708 KLQ9UEF7 1012 aa11.52□□□□□ -0.57
PTPN4-201ENST00000263708 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.52□□□□□ -0.57
PTPN4-201ENST00000263708 URADA6NGE7 173 aa11.52□□□□□ -0.57
PTPN4-201ENST00000263708 H3BNH8 94 aa11.52□□□□□ -0.57
PTPN4-201ENST00000263708 SERPINA1P01009 418 aa11.52□□□□□ -0.57
PTPN4-201ENST00000263708 TKTP29401 623 aaKnown RBP11.52□□□□□ -0.57
PTPN4-201ENST00000263708 CPNE1Q99829 537 aa11.52□□□□□ -0.57
PTPN4-201ENST00000263708 NAT9Q9BTE0 207 aa11.52□□□□□ -0.57
PTPN4-201ENST00000263708 FAM126AQ9BYI3 521 aaPredicted RBP11.52□□□□□ -0.57
PTPN4-201ENST00000263708 PTPRTO14522 1441 aa11.52□□□□□ -0.57
PTPN4-201ENST00000263708 HAT1O14929 419 aa11.52□□□□□ -0.57
PTPN4-201ENST00000263708 NCAM2O15394 837 aa11.52□□□□□ -0.57
PTPN4-201ENST00000263708 SPATA20Q8TB22 786 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms