RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 PDLIM1O00151 329 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 CCNT2O60583 730 aaKnown RBP12.17□□□□□ -0.46
USHBP1-201ENST00000252597 C1QAP02745 245 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 TFAP2AP05549 437 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 TSHRP16473 764 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 RPL14P50914 215 aaKnown RBP12.17□□□□□ -0.46
USHBP1-201ENST00000252597 FUT11Q495W5 492 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 FAM72AQ5TYM5 149 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 ARHGAP17Q68EM7 881 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 FAM72DQ6L9T8 149 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 HFE2Q6ZVN8 426 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 CHST15Q7LFX5 561 aaPredicted RBP12.17□□□□□ -0.46
USHBP1-201ENST00000252597 FAM72BQ86X60 149 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 NT5DC4Q86YG4 428 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 METTL25Q8N6Q8 603 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 REPS2Q8NFH8 660 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 OR6P1Q8NGX9 317 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 NXNL1Q96CM4 212 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 HDAC11Q96DB2 347 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 PRMT7Q9NVM4 692 aaPredicted RBP12.17□□□□□ -0.46
USHBP1-201ENST00000252597 MOCS1Q9NZB8 636 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 HDAC3O15379 428 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 PFKMP08237 780 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 ZFXP17010 805 aaPredicted RBP12.17□□□□□ -0.46
USHBP1-201ENST00000252597 ERCC2P18074 760 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 TARBP2Q15633 366 aaKnown RBP12.17□□□□□ -0.46
USHBP1-201ENST00000252597 CMPK2Q5EBM0 449 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 NOMO2Q5JPE7 1267 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 LILRA2Q8N149 483 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 SPATC1LQ9H0A9 340 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 SFMBT1Q9UHJ3 866 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 RNASEH2AO75792 299 aaKnown RBP12.17□□□□□ -0.46
USHBP1-201ENST00000252597 TNFAIP8O95379 198 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 RGS2P41220 211 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 STT3AP46977 705 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 PSMD7P51665 324 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 MTTPP55157 894 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 PPP1R3AQ16821 1122 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 CLEC6AQ6EIG7 209 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 UGT2A3Q6UWM9 527 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 TSPAN14Q8NG11 270 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 ARNTL2Q8WYA1 636 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 BCO2Q9BYV7 579 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 PDZD7Q9H5P4 517 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 DSEQ9UL01 958 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 PSME4Q14997 1843 aa12.17□□□□□ -0.46
USHBP1-201ENST00000252597 MKI67P46013 3256 aaKnown RBP12.16□□□□□ -0.46
USHBP1-201ENST00000252597 ARHGAP10A1A4S6 786 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 H3BNX3 289 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 GIPC1O14908 333 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 GCATO75600 419 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 GSRP00390 522 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 ASLP04424 464 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 PABPC4LP0CB38 370 aaKnown RBP12.16□□□□□ -0.46
USHBP1-201ENST00000252597 NR4A1P22736 598 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 GRIA3P42263 894 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 ZNF280AP59817 542 aaPredicted RBP12.16□□□□□ -0.46
USHBP1-201ENST00000252597 ITGA7Q13683 1181 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 TBC1D25Q3MII6 688 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 ZBTB49Q6ZSB9 765 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 UTS2BQ765I0 119 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 FAM47BQ8NA70 645 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 TRPM4Q8TD43 1214 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 ZMAT2Q96NC0 199 aaKnown RBP12.16□□□□□ -0.46
USHBP1-201ENST00000252597 KLHL32Q96NJ5 620 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 EIF2AQ9BY44 585 aaKnown RBP12.16□□□□□ -0.46
USHBP1-201ENST00000252597 NXF3Q9H4D5 531 aaKnown RBP12.16□□□□□ -0.46
USHBP1-201ENST00000252597 SOX17Q9H6I2 414 aaPredicted RBP12.16□□□□□ -0.46
USHBP1-201ENST00000252597 PNPLA8Q9NP80 782 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 SETD4Q9NVD3 440 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 RNF181Q9P0P0 153 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 C9IYK1 514 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 SUPT7LO94864 414 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 CCR3P51677 355 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 GJA9P57773 515 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 GRM1Q13255 1194 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 CPNE9Q8IYJ1 553 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 OFCC1Q8IZS5 231 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 FSTL5Q8N475 847 aaPredicted RBP12.16□□□□□ -0.46
USHBP1-201ENST00000252597 DRAXINQ8NBI3 349 aaPredicted RBP12.16□□□□□ -0.46
USHBP1-201ENST00000252597 QKIQ96PU8 341 aaKnown RBP eCLIP12.16□□□□□ -0.46
USHBP1-201ENST00000252597 SMARCAD1Q9H4L7 1026 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 DDX43Q9NXZ2 648 aaKnown RBP12.16□□□□□ -0.46
USHBP1-201ENST00000252597 STK39Q9UEW8 545 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 PIN4Q9Y237 131 aaKnown RBP12.16□□□□□ -0.46
USHBP1-201ENST00000252597 TNFSF13BQ9Y275 285 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 PCDHB12Q9Y5F1 795 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 CSADQ9Y600 493 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 NUP205Q92621 2012 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.16□□□□□ -0.46
USHBP1-201ENST00000252597 TSPAN3O60637 253 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 GABBR2O75899 941 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 CES1P23141 567 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 MYBPC1Q00872 1141 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 SEMA5AQ13591 1074 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 NEDD8Q15843 81 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 KBTBD6Q86V97 674 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 DDIASQ8IXT1 998 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 CPNE1Q99829 537 aa12.16□□□□□ -0.46
USHBP1-201ENST00000252597 C1orf21Q9H246 121 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms