RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 TK2O00142 265 aa19.05■□□□□ 0.64
CPSF3-201ENST00000238112 AP3B1O00203 1094 aa19.05■□□□□ 0.64
CPSF3-201ENST00000238112 PDHXO00330 501 aa19.05■□□□□ 0.64
CPSF3-201ENST00000238112 MATN2O00339 956 aa19.05■□□□□ 0.64
CPSF3-201ENST00000238112 DYNC1LI2O43237 492 aaPredicted RBP19.05■□□□□ 0.64
CPSF3-201ENST00000238112 AMHP03971 560 aa19.05■□□□□ 0.64
CPSF3-201ENST00000238112 PIK3R1P27986 724 aa19.05■□□□□ 0.64
CPSF3-201ENST00000238112 NMBRP28336 390 aa19.05■□□□□ 0.64
CPSF3-201ENST00000238112 GRIA4P48058 902 aa19.05■□□□□ 0.64
CPSF3-201ENST00000238112 RPL14P50914 215 aaKnown RBP19.05■□□□□ 0.64
CPSF3-201ENST00000238112 GJA9P57773 515 aa19.05■□□□□ 0.64
CPSF3-201ENST00000238112 GRM3Q14832 879 aa19.05■□□□□ 0.64
CPSF3-201ENST00000238112 C16orf89Q6UX73 402 aa19.05■□□□□ 0.64
CPSF3-201ENST00000238112 KBTBD6Q86V97 674 aa19.05■□□□□ 0.64
CPSF3-201ENST00000238112 MFN1Q8IWA4 741 aa19.05■□□□□ 0.64
CPSF3-201ENST00000238112 ARRDC4Q8NCT1 418 aa19.05■□□□□ 0.64
CPSF3-201ENST00000238112 GPR22Q99680 433 aa19.05■□□□□ 0.64
CPSF3-201ENST00000238112 TRIM4Q9C037 500 aa19.05■□□□□ 0.64
CPSF3-201ENST00000238112 DRC3Q9H069 523 aa19.05■□□□□ 0.64
CPSF3-201ENST00000238112 WDR55Q9H6Y2 383 aaPredicted RBP19.05■□□□□ 0.64
CPSF3-201ENST00000238112 CNGB3Q9NQW8 809 aa19.05■□□□□ 0.64
CPSF3-201ENST00000238112 PDCD11Q14690 1871 aaKnown RBP19.05■□□□□ 0.64
CPSF3-201ENST00000238112 GABRDO14764 452 aa19.05■□□□□ 0.64
CPSF3-201ENST00000238112 USP17L7P0C7H9 530 aa19.05■□□□□ 0.64
CPSF3-201ENST00000238112 HK2P52789 917 aa19.05■□□□□ 0.64
CPSF3-201ENST00000238112 PRKAA2P54646 552 aa19.05■□□□□ 0.64
CPSF3-201ENST00000238112 MSLNQ13421 630 aaPredicted RBP19.05■□□□□ 0.64
CPSF3-201ENST00000238112 USP10Q14694 798 aaKnown RBP19.05■□□□□ 0.64
CPSF3-201ENST00000238112 MMEL1Q495T6 779 aa19.05■□□□□ 0.64
CPSF3-201ENST00000238112 KIAA0319Q5VV43 1072 aa19.05■□□□□ 0.64
CPSF3-201ENST00000238112 CWF19L1Q69YN2 538 aaKnown RBP19.05■□□□□ 0.64
CPSF3-201ENST00000238112 SNX32Q86XE0 403 aa19.05■□□□□ 0.64
CPSF3-201ENST00000238112 ARHGAP18Q8N392 663 aa19.05■□□□□ 0.64
CPSF3-201ENST00000238112 CNDP1Q96KN2 507 aa19.05■□□□□ 0.64
CPSF3-201ENST00000238112 APBA2Q99767 749 aa19.05■□□□□ 0.64
CPSF3-201ENST00000238112 CENPKQ9BS16 269 aa19.05■□□□□ 0.64
CPSF3-201ENST00000238112 TINF2Q9BSI4 451 aa19.05■□□□□ 0.64
CPSF3-201ENST00000238112 MCMBPQ9BTE3 642 aa19.05■□□□□ 0.64
CPSF3-201ENST00000238112 PRPF19Q9UMS4 504 aaKnown RBP19.05■□□□□ 0.64
CPSF3-201ENST00000238112 CCDC78A2IDD5 438 aa19.04■□□□□ 0.64
CPSF3-201ENST00000238112 RGSL1A5PLK6 1076 aa19.04■□□□□ 0.64
CPSF3-201ENST00000238112 F2P00734 622 aa19.04■□□□□ 0.64
CPSF3-201ENST00000238112 JCHAINP01591 159 aa19.04■□□□□ 0.64
CPSF3-201ENST00000238112 YBX3P16989 372 aaKnown RBP eCLIP19.04■□□□□ 0.644e-6■■□□□ 13.4
CPSF3-201ENST00000238112 LRPAP1P30533 357 aa19.04■□□□□ 0.64
CPSF3-201ENST00000238112 GRAMD1BQ3KR37 738 aa19.04■□□□□ 0.64
CPSF3-201ENST00000238112 ICA1LQ8NDH6 482 aa19.04■□□□□ 0.64
CPSF3-201ENST00000238112 SLC10A4Q96EP9 437 aa19.04■□□□□ 0.64
CPSF3-201ENST00000238112 PGAP3Q96FM1 320 aaPredicted RBP19.04■□□□□ 0.64
CPSF3-201ENST00000238112 TEKT5Q96M29 485 aa19.04■□□□□ 0.64
CPSF3-201ENST00000238112 COLEC11Q9BWP8 271 aa19.04■□□□□ 0.64
CPSF3-201ENST00000238112 RHOJQ9H4E5 214 aa19.04■□□□□ 0.64
CPSF3-201ENST00000238112 WDCPQ9H6R7 721 aa19.04■□□□□ 0.64
CPSF3-201ENST00000238112 CRTAC1Q9NQ79 661 aa19.04■□□□□ 0.64
CPSF3-201ENST00000238112 OR12D3Q9UGF7 316 aa19.04■□□□□ 0.64
CPSF3-201ENST00000238112 DICER1Q9UPY3 1922 aaKnown RBP19.04■□□□□ 0.64
CPSF3-201ENST00000238112 H3BNX3 289 aa19.03■□□□□ 0.64
CPSF3-201ENST00000238112 CASQ2O14958 399 aaPredicted RBP19.03■□□□□ 0.64
CPSF3-201ENST00000238112 PHGDHO43175 533 aaKnown RBP19.03■□□□□ 0.64
CPSF3-201ENST00000238112 CABYRO75952 493 aa19.03■□□□□ 0.64
CPSF3-201ENST00000238112 PIGNO95427 931 aa19.03■□□□□ 0.64
CPSF3-201ENST00000238112 VCLP18206 1134 aa19.03■□□□□ 0.64
CPSF3-201ENST00000238112 EPHA3P29320 983 aa19.03■□□□□ 0.64
CPSF3-201ENST00000238112 SATB1Q01826 763 aa19.03■□□□□ 0.64
CPSF3-201ENST00000238112 PRKAA1Q13131 559 aa19.03■□□□□ 0.64
CPSF3-201ENST00000238112 LSM12Q3MHD2 195 aaKnown RBP19.03■□□□□ 0.64
CPSF3-201ENST00000238112 RASIP1Q5U651 963 aa19.03■□□□□ 0.64
CPSF3-201ENST00000238112 GPRIN1Q7Z2K8 1008 aa19.03■□□□□ 0.64
CPSF3-201ENST00000238112 GPR142Q7Z601 462 aa19.03■□□□□ 0.64
CPSF3-201ENST00000238112 LINC00523Q86TU6 105 aa19.03■□□□□ 0.64
CPSF3-201ENST00000238112 FAM35AQ86V20 835 aa19.03■□□□□ 0.64
CPSF3-201ENST00000238112 ZC3HC1Q86WB0 502 aaKnown RBP19.03■□□□□ 0.64
CPSF3-201ENST00000238112 KYQ8NBH2 561 aa19.03■□□□□ 0.64
CPSF3-201ENST00000238112 SMG8Q8ND04 991 aaKnown RBP19.03■□□□□ 0.64
CPSF3-201ENST00000238112 ZFAND2BQ8WV99 257 aa19.03■□□□□ 0.64
CPSF3-201ENST00000238112 MOCOSQ96EN8 888 aa19.03■□□□□ 0.64
CPSF3-201ENST00000238112 ACSS2Q9NR19 701 aa19.03■□□□□ 0.64
CPSF3-201ENST00000238112 STK39Q9UEW8 545 aa19.03■□□□□ 0.64
CPSF3-201ENST00000238112 G3BP2Q9UN86 482 aaKnown RBP19.03■□□□□ 0.64
CPSF3-201ENST00000238112 SNX10Q9Y5X0 201 aa19.03■□□□□ 0.64
CPSF3-201ENST00000238112 UNCXA6NJT0 531 aa19.03■□□□□ 0.64
CPSF3-201ENST00000238112 F9P00740 461 aa19.03■□□□□ 0.64
CPSF3-201ENST00000238112 FAM163BP0C2L3 166 aa19.03■□□□□ 0.64
CPSF3-201ENST00000238112 GLRBP48167 497 aa19.03■□□□□ 0.64
CPSF3-201ENST00000238112 ZNF135P52742 658 aaPredicted RBP19.03■□□□□ 0.64
CPSF3-201ENST00000238112 SLC12A1Q13621 1099 aa19.03■□□□□ 0.64
CPSF3-201ENST00000238112 CYLC2Q14093 348 aaPredicted RBP19.03■□□□□ 0.64
CPSF3-201ENST00000238112 ARL13AQ5H913 290 aaPredicted RBP19.03■□□□□ 0.64
CPSF3-201ENST00000238112 TWF2Q6IBS0 349 aaKnown RBP19.03■□□□□ 0.64
CPSF3-201ENST00000238112 SDCCAG8Q86SQ7 713 aaPredicted RBP19.03■□□□□ 0.64
CPSF3-201ENST00000238112 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP19.03■□□□□ 0.64
CPSF3-201ENST00000238112 RP9Q8TA86 221 aaKnown RBP19.03■□□□□ 0.64
CPSF3-201ENST00000238112 SMOQ99835 787 aa19.03■□□□□ 0.64
CPSF3-201ENST00000238112 NUF2Q9BZD4 464 aa19.03■□□□□ 0.64
CPSF3-201ENST00000238112 TKTL2Q9H0I9 626 aa19.03■□□□□ 0.64
CPSF3-201ENST00000238112 RRN3Q9NYV6 651 aa19.03■□□□□ 0.64
CPSF3-201ENST00000238112 TXNDC9O14530 226 aa19.02■□□□□ 0.64
CPSF3-201ENST00000238112 PSMD3O43242 534 aa19.02■□□□□ 0.64
CPSF3-201ENST00000238112 PEX1O43933 1283 aa19.02■□□□□ 0.64
CPSF3-201ENST00000238112 DNAJB2P25686 324 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms