RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 RAP2CQ9Y3L5 183 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 COPG1Q9Y678 874 aaKnown RBP12.62□□□□□ -0.39
NUP88-201ENST00000225696 CEPT1Q9Y6K0 416 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 LOC285556D6RIA3 1793 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 CITO14578 2027 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 MAGEB3O15480 346 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 ZBTB24O43167 697 aaPredicted RBP12.62□□□□□ -0.39
NUP88-201ENST00000225696 TSPAN1O60635 241 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 BCAS2O75934 225 aaPredicted RBP12.62□□□□□ -0.39
NUP88-201ENST00000225696 CDH2P19022 906 aaPredicted RBP12.62□□□□□ -0.39
NUP88-201ENST00000225696 ME2P23368 584 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 PTPN3P26045 913 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 NMBRP28336 390 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 GABRB3P28472 473 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 TKTP29401 623 aaKnown RBP12.62□□□□□ -0.39
NUP88-201ENST00000225696 SULT1E1P49888 294 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 EMP3P54852 163 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 TNFAIP2Q03169 654 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 KIZQ2M2Z5 673 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 MGAT5BQ3V5L5 792 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 RIOX2Q8IUF8 465 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 MFSD6LQ8IWD5 586 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 PGAM4Q8N0Y7 254 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 NUP93Q8N1F7 819 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 ADCY4Q8NFM4 1077 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 RIN3Q8TB24 985 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 SLC2A14Q8TDB8 520 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 GAB3Q8WWW8 586 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 UPF1Q92900 1129 aaKnown RBP eCLIP12.62□□□□□ -0.39
NUP88-201ENST00000225696 SERPINI1Q99574 410 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 NAT9Q9BTE0 207 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 SPATC1LQ9H0A9 340 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 LRRC40Q9H9A6 602 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 ZBTB26Q9HCK0 441 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 C20orf96Q9NUD7 363 aaPredicted RBP12.62□□□□□ -0.39
NUP88-201ENST00000225696 KLHL8Q9P2G9 620 aaPredicted RBP12.62□□□□□ -0.39
NUP88-201ENST00000225696 GMPR2Q9P2T1 348 aaKnown RBP12.62□□□□□ -0.39
NUP88-201ENST00000225696 A0A0J9YVX5 310 aa12.61□□□□□ -0.39
NUP88-201ENST00000225696 KCNU1A8MYU2 1149 aa12.61□□□□□ -0.39
NUP88-201ENST00000225696 KPNA7A9QM74 516 aa12.61□□□□□ -0.39
NUP88-201ENST00000225696 PLOD2O00469 737 aa12.61□□□□□ -0.39
NUP88-201ENST00000225696 HBP1O60381 514 aa12.61□□□□□ -0.39
NUP88-201ENST00000225696 BEST1O76090 585 aa12.61□□□□□ -0.39
NUP88-201ENST00000225696 TOMM70O94826 608 aa12.61□□□□□ -0.39
NUP88-201ENST00000225696 VAPBO95292 243 aa12.61□□□□□ -0.39
NUP88-201ENST00000225696 CAPNS1P04632 268 aa12.61□□□□□ -0.39
NUP88-201ENST00000225696 NME3Q13232 169 aa12.61□□□□□ -0.39
NUP88-201ENST00000225696 MPP3Q13368 585 aa12.61□□□□□ -0.39
NUP88-201ENST00000225696 FAM187BQ17R55 369 aa12.61□□□□□ -0.39
NUP88-201ENST00000225696 USP41Q3LFD5 358 aa12.61□□□□□ -0.39
NUP88-201ENST00000225696 GK5Q6ZS86 529 aa12.61□□□□□ -0.39
NUP88-201ENST00000225696 HFE2Q6ZVN8 426 aa12.61□□□□□ -0.39
NUP88-201ENST00000225696 RPS27LQ71UM5 84 aaKnown RBP12.61□□□□□ -0.39
NUP88-201ENST00000225696 KCNMB4Q86W47 210 aa12.61□□□□□ -0.39
NUP88-201ENST00000225696 CENPLQ8N0S6 344 aaPredicted RBP12.61□□□□□ -0.39
NUP88-201ENST00000225696 CPSF7Q8N684 471 aaKnown RBP12.61□□□□□ -0.39
NUP88-201ENST00000225696 NPWQ8N729 165 aa12.61□□□□□ -0.39
NUP88-201ENST00000225696 HMGCLL1Q8TB92 370 aa12.61□□□□□ -0.39
NUP88-201ENST00000225696 PPP1R13LQ8WUF5 828 aa12.61□□□□□ -0.39
NUP88-201ENST00000225696 LRTOMTQ8WZ04 291 aa12.61□□□□□ -0.39
NUP88-201ENST00000225696 APBA2Q99767 749 aa12.61□□□□□ -0.39
NUP88-201ENST00000225696 SLC29A1Q99808 456 aa12.61□□□□□ -0.39
NUP88-201ENST00000225696 Q9H521 79 aa12.61□□□□□ -0.39
NUP88-201ENST00000225696 COQ10BQ9H8M1 238 aa12.61□□□□□ -0.39
NUP88-201ENST00000225696 DNAAF2Q9NVR5 837 aaKnown RBP12.61□□□□□ -0.39
NUP88-201ENST00000225696 SNTG2Q9NY99 539 aa12.61□□□□□ -0.39
NUP88-201ENST00000225696 IGSF9Q9P2J2 1179 aa12.61□□□□□ -0.39
NUP88-201ENST00000225696 VPS28Q9UK41 221 aa12.61□□□□□ -0.39
NUP88-201ENST00000225696 ADAM28Q9UKQ2 775 aa12.61□□□□□ -0.39
NUP88-201ENST00000225696 DMTF1Q9Y222 760 aa12.61□□□□□ -0.39
NUP88-201ENST00000225696 SPTLC1O15269 473 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 DLX3O60479 287 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 STAU1O95793 577 aaKnown RBP12.6□□□□□ -0.39
NUP88-201ENST00000225696 SLC35E2BP0CK96 405 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 SETSIPP0DME0 302 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 EPHX2P34913 555 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 MATKP42679 507 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 CSRP3P50461 194 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 GALK1P51570 392 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 RALGDSQ12967 914 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 ZBTB17Q13105 803 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 ART3Q13508 389 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 DPYSQ14117 519 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 TSTD2Q5T7W7 516 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 LIPMQ5VYY2 423 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 ZYG11AQ6WRX3 759 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 CTU1Q7Z7A3 348 aaKnown RBP12.6□□□□□ -0.39
NUP88-201ENST00000225696 CHERPQ8IWX8 916 aaKnown RBP12.6□□□□□ -0.39
NUP88-201ENST00000225696 FSTL5Q8N475 847 aaPredicted RBP12.6□□□□□ -0.39
NUP88-201ENST00000225696 ANKRD52Q8NB46 1076 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 ZFRQ96KR1 1074 aaKnown RBP12.6□□□□□ -0.39
NUP88-201ENST00000225696 NFKBIZQ9BYH8 718 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 SMARCAD1Q9H4L7 1026 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 TNFRSF12AQ9NP84 129 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 PIGVQ9NUD9 493 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 FIS1Q9Y3D6 152 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 NEMP2A6NFY4 417 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 TARM1B6A8C7 271 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 E7ENX8 843 aa12.6□□□□□ -0.39
NUP88-201ENST00000225696 CLDN5O00501 218 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms