RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 ATRNO75882 1429 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 SERPINA3P01011 423 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 GYPCP04921 128 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 TUBA1BP68363 451 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 PRKG2Q13237 762 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 Q4G0T1 1027 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 TUBA1AQ71U36 451 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 GMCL1P1Q8NEA9 526 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 OXNAD1Q96HP4 312 aaPredicted RBP6.16□□□□□ -1.42
VPS13D-201ENST00000011700 TMBIM4Q9HC24 238 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 SEMA3GQ9NS98 782 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 MTMR4Q9NYA4 1195 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 MED11Q9P086 117 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 POLIQ9UNA4 740 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 SLC16A4O15374 487 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 ATP6V1B1P15313 513 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 SLC1A6P48664 564 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 ZNF543Q08ER8 600 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 RASGEF1BQ0VAM2 473 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 MYBPC3Q14896 1274 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 TEAD4Q15561 434 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 RNF43Q68DV7 783 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 TMEM126BQ8IUX1 230 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.16□□□□□ -1.42
VPS13D-201ENST00000011700 C1orf54Q8WWF1 131 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 DNAJB3Q8WWF6 145 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 A1CFQ9NQ94 594 aaKnown RBP6.16□□□□□ -1.42
VPS13D-201ENST00000011700 HEY2Q9UBP5 337 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 PCSK1NQ9UHG2 260 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 PCYOX1Q9UHG3 505 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 RAB21Q9UL25 225 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 DUSP12Q9UNI6 340 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 ATP9BO43861 1147 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 HSMCR30P0CW71 290 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 CPA3P15088 417 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 GSTM5P46439 218 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 ALDH3A2P51648 485 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 EFR3AQ14156 821 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 DPY19L1Q2PZI1 675 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 SLC25A25Q6KCM7 469 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 NIPAL1Q6NVV3 410 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 ZNF720Q7Z2F6 126 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 AGBL3Q8NEM8 1001 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 TSPAN14Q8NG11 270 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 XRN2Q9H0D6 950 aaKnown RBP eCLIP6.16□□□□□ -1.42
VPS13D-201ENST00000011700 PCBD2Q9H0N5 130 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 FAM49AQ9H0Q0 323 aaPredicted RBP6.16□□□□□ -1.42
VPS13D-201ENST00000011700 POLR1BQ9H9Y6 1135 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 RBM12Q9NTZ6 932 aaKnown RBP6.16□□□□□ -1.42
VPS13D-201ENST00000011700 KIDINS220Q9ULH0 1771 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 ANKRD31Q8N7Z5 1873 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 ZNF3P17036 446 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 TARSP26639 723 aaKnown RBP6.16□□□□□ -1.42
VPS13D-201ENST00000011700 MTTPP55157 894 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 LENG1Q96BZ8 264 aaPredicted RBP6.16□□□□□ -1.42
VPS13D-201ENST00000011700 LRRC46Q96FV0 321 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 FAM126AQ9BYI3 521 aaPredicted RBP6.16□□□□□ -1.42
VPS13D-201ENST00000011700 ACTR8Q9H981 624 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 SUCOQ9UBS9 1254 aaKnown RBP6.16□□□□□ -1.42
VPS13D-201ENST00000011700 AHCTF1Q8WYP5 2266 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 SLC28A1O00337 649 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 ZBTB39O15060 712 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 NR6A1Q15406 480 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 TBCELQ5QJ74 424 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 KATNAL2Q8IYT4 538 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 SLC16A10Q8TF71 515 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 TTLL2Q9BWV7 592 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 SEZ6LQ9BYH1 1024 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 REXO4Q9GZR2 422 aaKnown RBP6.16□□□□□ -1.42
VPS13D-201ENST00000011700 SYNDIG1Q9H7V2 258 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 EXD2Q9NVH0 621 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 LEF1Q9UJU2 399 aaPredicted RBP6.16□□□□□ -1.42
VPS13D-201ENST00000011700 INVSQ9Y283 1065 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 POLR1DQ9Y2S0 133 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 TAF6LQ9Y6J9 622 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 ARHGAP23Q9P227 1491 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 XRN1Q8IZH2 1706 aaKnown RBP6.16□□□□□ -1.42
VPS13D-201ENST00000011700 CLOCKO15516 846 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 BAIAP3O94812 1187 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 COL6A2P12110 1019 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 PRG2P13727 222 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 RBM34P42696 430 aaKnown RBP6.16□□□□□ -1.42
VPS13D-201ENST00000011700 ERMARDQ5T6L9 678 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 KLHDC7AQ5VTJ3 777 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 SWSAP1Q6NVH7 229 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 BORAQ6PGQ7 559 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 SYCE2Q6PIF2 218 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 PLET1Q6UQ28 207 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 OAFQ86UD1 273 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP6.16□□□□□ -1.422e-6■■■■■ 34.8
VPS13D-201ENST00000011700 PHACTR4Q8IZ21 702 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 C10orf53Q8N6V4 93 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 CCDC107Q8WV48 283 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 TIFAQ96CG3 184 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 GMCL1Q96IK5 515 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 WDR24Q96S15 920 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 ZCWPW1Q9H0M4 648 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 LGR6Q9HBX8 967 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 SENP2Q9HC62 589 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 MOSPD1Q9UJG1 213 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms