RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 SERPINB6P35237 376 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 CXCR3P49682 368 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 PSEN2P49810 448 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 HK2P52789 917 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 PRKAA2P54646 552 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 ZNF33AQ06730 810 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 USP4Q13107 963 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 KLF10Q13118 480 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 DLG2Q15700 870 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 PM20D1Q6GTS8 502 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 FRMD7Q6ZUT3 714 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 GPRIN1Q7Z2K8 1008 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 TMEM86AQ8N2M4 240 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 ADAM32Q8TC27 787 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 BRI3BPQ8WY22 251 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 VPS39Q96JC1 886 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 CNDP1Q96KN2 507 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 SENP8Q96LD8 212 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 GPR22Q99680 433 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 CCDC28BQ9BUN5 200 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 KIFC1Q9BW19 673 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 COLEC11Q9BWP8 271 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 GATA5Q9BWX5 397 aaPredicted RBP13.01□□□□□ -0.33
LINC00540-203ENST00000631321 CAB39LQ9H9S4 337 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 OXSMQ9NWU1 459 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 PTCH2Q9Y6C5 1203 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 CCL15-CCL14A0A0B4J2E2 113 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 HHLA1C9JL84 531 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 IGFBP6P24592 240 aaPredicted RBP13.01□□□□□ -0.33
LINC00540-203ENST00000631321 LHX1P48742 406 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 CACNA2D1P54289 1103 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 XIAPP98170 497 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 CCL15Q16663 113 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 SLC9B1Q4ZJI4 515 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 ZYG11AQ6WRX3 759 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 RNF111Q6ZNA4 994 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 FBXW8Q8N3Y1 598 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 TMEM151AQ8N4L1 468 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 MAPK15Q8TD08 544 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 PPP2R3CQ969Q6 453 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 ATXN7L3BQ96GX2 97 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 TSGA13Q96PP4 275 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 EPAS1Q99814 870 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 C1QTNF1Q9BXJ1 281 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 C20orf96Q9NUD7 363 aaPredicted RBP13.01□□□□□ -0.33
LINC00540-203ENST00000631321 DDIT4Q9NX09 232 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 PDP2Q9P2J9 529 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 ARHGAP26Q9UNA1 814 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 ZNF236Q9UL36 1845 aa13□□□□□ -0.33
LINC00540-203ENST00000631321 MATN2O00339 956 aa13□□□□□ -0.33
LINC00540-203ENST00000631321 PSMD3O43242 534 aa13□□□□□ -0.33
LINC00540-203ENST00000631321 DCXO43602 365 aa13□□□□□ -0.33
LINC00540-203ENST00000631321 FESP07332 822 aa13□□□□□ -0.33
LINC00540-203ENST00000631321 NCAM1P13591 858 aa13□□□□□ -0.33
LINC00540-203ENST00000631321 MTTPP55157 894 aa13□□□□□ -0.33
LINC00540-203ENST00000631321 ANO4Q32M45 955 aa13□□□□□ -0.33
LINC00540-203ENST00000631321 DEFB107AQ8IZN7 70 aa13□□□□□ -0.33
LINC00540-203ENST00000631321 TDRD5Q8NAT2 981 aaKnown RBP13□□□□□ -0.33
LINC00540-203ENST00000631321 ACVR1CQ8NER5 493 aa13□□□□□ -0.33
LINC00540-203ENST00000631321 TRAPPC9Q96Q05 1148 aa13□□□□□ -0.33
LINC00540-203ENST00000631321 SLC24A3Q9HC58 644 aa13□□□□□ -0.33
LINC00540-203ENST00000631321 CHRAC1Q9NRG0 131 aa13□□□□□ -0.33
LINC00540-203ENST00000631321 IARS2Q9NSE4 1012 aaKnown RBP13□□□□□ -0.33
LINC00540-203ENST00000631321 TMEM30AQ9NV96 361 aa13□□□□□ -0.33
LINC00540-203ENST00000631321 POMPQ9Y244 141 aa13□□□□□ -0.33
LINC00540-203ENST00000631321 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13□□□□□ -0.33
LINC00540-203ENST00000631321 MAP3K13O43283 966 aa13□□□□□ -0.33
LINC00540-203ENST00000631321 ATP9BO43861 1147 aa13□□□□□ -0.33
LINC00540-203ENST00000631321 PDE5AO76074 875 aa13□□□□□ -0.33
LINC00540-203ENST00000631321 USP17L7P0C7H9 530 aa13□□□□□ -0.33
LINC00540-203ENST00000631321 YBX3P16989 372 aaKnown RBP eCLIP13□□□□□ -0.33
LINC00540-203ENST00000631321 HOXC8P31273 242 aa13□□□□□ -0.33
LINC00540-203ENST00000631321 CDH17Q12864 832 aa13□□□□□ -0.33
LINC00540-203ENST00000631321 FAM110CQ1W6H9 321 aa13□□□□□ -0.33
LINC00540-203ENST00000631321 CFAP157Q5JU67 520 aa13□□□□□ -0.33
LINC00540-203ENST00000631321 NAPEPLDQ6IQ20 393 aa13□□□□□ -0.33
LINC00540-203ENST00000631321 RAPH1Q70E73 1250 aa13□□□□□ -0.33
LINC00540-203ENST00000631321 ZC3HC1Q86WB0 502 aaKnown RBP13□□□□□ -0.33
LINC00540-203ENST00000631321 PDSS2Q86YH6 399 aa13□□□□□ -0.33
LINC00540-203ENST00000631321 PYDC1Q8WXC3 89 aa13□□□□□ -0.33
LINC00540-203ENST00000631321 PCED1BQ96HM7 432 aa13□□□□□ -0.33
LINC00540-203ENST00000631321 ACE2Q9BYF1 805 aaPredicted RBP13□□□□□ -0.33
LINC00540-203ENST00000631321 DRC3Q9H069 523 aa13□□□□□ -0.33
LINC00540-203ENST00000631321 ILKAPQ9H0C8 392 aaPredicted RBP13□□□□□ -0.33
LINC00540-203ENST00000631321 TSPYL2Q9H2G4 693 aaPredicted RBP13□□□□□ -0.33
LINC00540-203ENST00000631321 VCX3BQ9H321 246 aa13□□□□□ -0.33
LINC00540-203ENST00000631321 RHOJQ9H4E5 214 aa13□□□□□ -0.33
LINC00540-203ENST00000631321 SLC38A7Q9NVC3 462 aa13□□□□□ -0.33
LINC00540-203ENST00000631321 RAP2CQ9Y3L5 183 aa13□□□□□ -0.33
LINC00540-203ENST00000631321 COL4A4P53420 1690 aaPredicted RBP13□□□□□ -0.33
LINC00540-203ENST00000631321 MYBPHLA2RUH7 354 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 SLC22A2O15244 555 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 AHCYL1O43865 530 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 CABYRO75952 493 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 LYNP07948 512 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 F7P08709 466 aaPredicted RBP12.99□□□□□ -0.33
LINC00540-203ENST00000631321 SBK3P0C264 359 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 PIM1P11309 404 aaPredicted RBP12.99□□□□□ -0.33
LINC00540-203ENST00000631321 NMBRP28336 390 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 ABCG1P45844 678 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms