RNA–Protein interactions for RNA: ENST00000618500.4

SNCA-213, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,022 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-213ENST00000618500 MFN1Q8IWA4 741 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 UBR7Q8N806 425 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 OR14C36Q8NHC7 312 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 WFDC5Q8TCV5 224 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 EXTL1Q92935 676 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 CYFIP2Q96F07 1278 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 FCRL2Q96LA5 508 aaPredicted RBP4.72□□□□□ -1.65
SNCA-213ENST00000618500 CCDC114Q96M63 670 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 HAPLN3Q96S86 360 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 TFIP11Q9UBB9 837 aaKnown RBP4.72□□□□□ -1.65
SNCA-213ENST00000618500 HS3ST2Q9Y278 367 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 KCTD3Q9Y597 815 aa4.72□□□□□ -1.65
SNCA-213ENST00000618500 URB1O60287 2271 aaKnown RBP4.71□□□□□ -1.65
SNCA-213ENST00000618500 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP4.71□□□□□ -1.66
SNCA-213ENST00000618500 PVALEFA0A1B0GWK0 134 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 B4E171 279 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 ALPIP09923 528 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 TNFRSF8P28908 595 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 TSPAN7P41732 249 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 SGSHP51688 502 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 RPS21P63220 83 aaKnown RBP4.71□□□□□ -1.66
SNCA-213ENST00000618500 ZNF177Q13360 481 aaPredicted RBP4.71□□□□□ -1.66
SNCA-213ENST00000618500 ZSCAN23Q3MJ62 389 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 LACTB2Q53H82 288 aaPredicted RBP4.71□□□□□ -1.66
SNCA-213ENST00000618500 PERM1Q5SV97 790 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 NADSYN1Q6IA69 706 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 ESRP1Q6NXG1 681 aaKnown RBP4.71□□□□□ -1.66
SNCA-213ENST00000618500 OGFOD3Q6PK18 319 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 RAB11FIP2Q7L804 512 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 MMAAQ8IVH4 418 aaKnown RBP4.71□□□□□ -1.66
SNCA-213ENST00000618500 SLITRK4Q8IW52 837 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 STK40Q8N2I9 435 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 OR13H1Q8NG92 308 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 ATL2Q8NHH9 583 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 PLEKHO2Q8TD55 490 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 ALG14Q96F25 216 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 NAF1Q96HR8 494 aaKnown RBP4.71□□□□□ -1.66
SNCA-213ENST00000618500 PPP1R16AQ96I34 528 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 SLC45A3Q96JT2 553 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 SERPINB11Q96P15 392 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 PRMT1Q99873 361 aaKnown RBP4.71□□□□□ -1.66
SNCA-213ENST00000618500 FGFBP2Q9BYJ0 223 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 ABCG4Q9H172 646 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 TRIT1Q9H3H1 467 aaKnown RBP4.71□□□□□ -1.66
SNCA-213ENST00000618500 HMGXB4Q9UGU5 601 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 PCDHGB7Q9Y5F8 929 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 OR51B4Q9Y5P0 310 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 LAMA5O15230 3695 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 TTC34A8MYJ7 566 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 PYCARD-AS1I3L0S3 204 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 FAM87AP0C7U9 286 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 FECHP22830 423 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 NNMTP40261 264 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 SLC8A3P57103 927 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 AMPD3Q01432 767 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 BST2Q10589 180 aaKnown RBP4.71□□□□□ -1.66
SNCA-213ENST00000618500 FGL2Q14314 439 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 NCAPHQ15003 741 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 STILQ15468 1287 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 FHL5Q5TD97 284 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 UNC13DQ70J99 1090 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 HTR3CQ8WXA8 447 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 CCDC3Q9BQI4 270 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 ZPBPQ9BS86 351 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 C1QTNF2Q9BXJ5 285 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 ZHX3Q9H4I2 956 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 PCIF1Q9H4Z3 704 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 LRRC4CQ9HCJ2 640 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 DKK3Q9UBP4 350 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 SLC25A13Q9UJS0 675 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 PHTF1Q9UMS5 762 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 PCDHB11Q9Y5F2 797 aa4.71□□□□□ -1.66
SNCA-213ENST00000618500 TBC1D3DA0A087WVF3 549 aa4.7□□□□□ -1.66
SNCA-213ENST00000618500 TBC1D3IA0A087WXS9 549 aa4.7□□□□□ -1.66
SNCA-213ENST00000618500 TBC1D3EA0A087X179 549 aa4.7□□□□□ -1.66
SNCA-213ENST00000618500 TBC1D3KA0A087X1G2 549 aa4.7□□□□□ -1.66
SNCA-213ENST00000618500 TBC1D3FA6NER0 549 aaPredicted RBP4.7□□□□□ -1.66
SNCA-213ENST00000618500 TBC1D3LB9A6J9 549 aa4.7□□□□□ -1.66
SNCA-213ENST00000618500 STMND1H3BQB6 276 aa4.7□□□□□ -1.66
SNCA-213ENST00000618500 SART1O43290 800 aaKnown RBP4.7□□□□□ -1.66
SNCA-213ENST00000618500 TSPAN6O43657 245 aa4.7□□□□□ -1.66
SNCA-213ENST00000618500 PRNPP04156 253 aa4.7□□□□□ -1.66
SNCA-213ENST00000618500 TBC1D3HP0C7X1 549 aa4.7□□□□□ -1.66
SNCA-213ENST00000618500 DCTP40126 519 aa4.7□□□□□ -1.66
SNCA-213ENST00000618500 DAOAP59103 153 aa4.7□□□□□ -1.66
SNCA-213ENST00000618500 YWHAEP62258 255 aaKnown RBP4.7□□□□□ -1.66
SNCA-213ENST00000618500 CNTN1Q12860 1018 aa4.7□□□□□ -1.66
SNCA-213ENST00000618500 EIF2B5Q13144 721 aaKnown RBP4.7□□□□□ -1.66
SNCA-213ENST00000618500 RNF219Q5W0B1 726 aaPredicted RBP4.7□□□□□ -1.66
SNCA-213ENST00000618500 TBC1D3GQ6DHY5 549 aa4.7□□□□□ -1.66
SNCA-213ENST00000618500 TBC1D3CQ6IPX1 549 aa4.7□□□□□ -1.66
SNCA-213ENST00000618500 TMC6Q7Z403 805 aa4.7□□□□□ -1.66
SNCA-213ENST00000618500 C17orf82Q86X59 251 aaPredicted RBP4.7□□□□□ -1.66
SNCA-213ENST00000618500 TBC1D3Q8IZP1 549 aaPredicted RBP4.7□□□□□ -1.66
SNCA-213ENST00000618500 HCAR2Q8TDS4 363 aa4.7□□□□□ -1.66
SNCA-213ENST00000618500 GANCQ8TET4 914 aa4.7□□□□□ -1.66
SNCA-213ENST00000618500 BMFQ96LC9 184 aa4.7□□□□□ -1.66
SNCA-213ENST00000618500 TEFMQ96QE5 360 aaKnown RBP4.7□□□□□ -1.66
SNCA-213ENST00000618500 PLIN2Q99541 437 aa4.7□□□□□ -1.66
SNCA-213ENST00000618500 ARID3AQ99856 593 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms