RNA–Protein interactions for RNA: ENST00000618207.4

CIITA-212, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5 BASIC

Gene CIITA, Length 2,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-212ENST00000618207 NBNO60934 754 aa12.65□□□□□ -0.38
CIITA-212ENST00000618207 CNTN5O94779 1100 aa12.65□□□□□ -0.38
CIITA-212ENST00000618207 RPLP2P05387 115 aaKnown RBP12.65□□□□□ -0.38
CIITA-212ENST00000618207 TYMPP19971 482 aa12.65□□□□□ -0.38
CIITA-212ENST00000618207 IRF9Q00978 393 aa12.65□□□□□ -0.38
CIITA-212ENST00000618207 DSC1Q08554 894 aa12.65□□□□□ -0.38
CIITA-212ENST00000618207 SEPT6Q14141 434 aa12.65□□□□□ -0.38
CIITA-212ENST00000618207 LRRC8DQ7L1W4 858 aa12.65□□□□□ -0.38
CIITA-212ENST00000618207 CLNKQ7Z7G1 428 aa12.65□□□□□ -0.38
CIITA-212ENST00000618207 KCNMB4Q86W47 210 aa12.65□□□□□ -0.38
CIITA-212ENST00000618207 NUP93Q8N1F7 819 aa12.65□□□□□ -0.38
CIITA-212ENST00000618207 ZSCAN18Q8TBC5 510 aaPredicted RBP12.65□□□□□ -0.38
CIITA-212ENST00000618207 CRISPLD1Q9H336 500 aa12.65□□□□□ -0.38
CIITA-212ENST00000618207 NOD2Q9HC29 1040 aa12.65□□□□□ -0.38
CIITA-212ENST00000618207 NEU3Q9UQ49 428 aa12.65□□□□□ -0.38
CIITA-212ENST00000618207 MTO1Q9Y2Z2 717 aaKnown RBP12.65□□□□□ -0.38
CIITA-212ENST00000618207 PQBP1O60828 265 aaKnown RBP12.64□□□□□ -0.39
CIITA-212ENST00000618207 ATP6V1G2O95670 118 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 DLDP09622 509 aaKnown RBP12.64□□□□□ -0.39
CIITA-212ENST00000618207 RPL17P18621 184 aaKnown RBP12.64□□□□□ -0.39
CIITA-212ENST00000618207 CRHR1P34998 444 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 ETFBP38117 255 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 GP5P40197 560 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 CCNFP41002 786 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 ERFP50548 548 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 PAPOLAP51003 745 aaKnown RBP12.64□□□□□ -0.39
CIITA-212ENST00000618207 CCL23P55773 120 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 PRPSAP1Q14558 356 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 ALFQ53S48 1182 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 FAM26DQ5JW98 314 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 PIK3R6Q5UE93 754 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 LHX8Q68G74 356 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 KCTD11Q693B1 232 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 FSTL4Q6MZW2 842 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 DCP1BQ8IZD4 617 aaKnown RBP12.64□□□□□ -0.39
CIITA-212ENST00000618207 FBXO32Q969P5 355 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 RILPQ96NA2 401 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 SMOC2Q9H3U7 446 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 HMX1Q9NP08 348 aaPredicted RBP12.64□□□□□ -0.39
CIITA-212ENST00000618207 CASS4Q9NQ75 786 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 SNX15Q9NRS6 342 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 ARHGEF38Q9NXL2 777 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 EMCNQ9ULC0 261 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 PCDHB7Q9Y5E2 793 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 MAFKO60675 156 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 DNAJC6O75061 913 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 CABYRO75952 493 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 EOMESO95936 686 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 IGLV3-25P01717 112 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 HLA-DQB2P05538 268 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 BPGMP07738 259 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 HOXD10P28358 340 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 AQP5P55064 265 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 DUSP4Q13115 394 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 STX3Q13277 289 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 CTBP1Q13363 440 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 SPANXN3Q5MJ09 141 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 C10orf120Q5SQS8 335 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 RAP1GAP2Q684P5 730 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 PRSS55Q6UWB4 352 aaPredicted RBP12.64□□□□□ -0.39
CIITA-212ENST00000618207 RSPO2Q6UXX9 243 aaPredicted RBP12.64□□□□□ -0.39
CIITA-212ENST00000618207 FSD1LQ9BXM9 530 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 OSBPL2Q9H1P3 480 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 TXLNGQ9NUQ3 528 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 ARL8BQ9NVJ2 186 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 ADAM28Q9UKQ2 775 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 SLC39A10Q9ULF5 831 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 LRFN2Q9ULH4 789 aa12.64□□□□□ -0.39
CIITA-212ENST00000618207 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.64□□□□□ -0.39
CIITA-212ENST00000618207 THSD7BQ9C0I4 1608 aa12.63□□□□□ -0.39
CIITA-212ENST00000618207 CFAP73A6NFT4 308 aa12.63□□□□□ -0.39
CIITA-212ENST00000618207 J3KR12 359 aa12.63□□□□□ -0.39
CIITA-212ENST00000618207 MGRN1O60291 552 aa12.63□□□□□ -0.39
CIITA-212ENST00000618207 VAPBO95292 243 aa12.63□□□□□ -0.39
CIITA-212ENST00000618207 GLRBP48167 497 aa12.63□□□□□ -0.39
CIITA-212ENST00000618207 TBX4P57082 545 aa12.63□□□□□ -0.39
CIITA-212ENST00000618207 NKX3-2P78367 333 aa12.63□□□□□ -0.39
CIITA-212ENST00000618207 TAF10Q12962 218 aa12.63□□□□□ -0.39
CIITA-212ENST00000618207 RCN2Q14257 317 aa12.63□□□□□ -0.39
CIITA-212ENST00000618207 MAP3K21Q5TCX8 1036 aa12.63□□□□□ -0.39
CIITA-212ENST00000618207 RAPH1Q70E73 1250 aa12.63□□□□□ -0.39
CIITA-212ENST00000618207 TAS1R1Q7RTX1 841 aa12.63□□□□□ -0.39
CIITA-212ENST00000618207 DEFB128Q7Z7B8 93 aa12.63□□□□□ -0.39
CIITA-212ENST00000618207 C10orf107Q8IVU9 208 aa12.63□□□□□ -0.39
CIITA-212ENST00000618207 SPATA6LQ8N4H0 392 aa12.63□□□□□ -0.39
CIITA-212ENST00000618207 UTP4Q969X6 686 aaKnown RBP12.63□□□□□ -0.39
CIITA-212ENST00000618207 EBF4Q9BQW3 602 aa12.63□□□□□ -0.39
CIITA-212ENST00000618207 NAT9Q9BTE0 207 aa12.63□□□□□ -0.39
CIITA-212ENST00000618207 FTHL17Q9BXU8 183 aa12.63□□□□□ -0.39
CIITA-212ENST00000618207 NMUR2Q9GZQ4 415 aa12.63□□□□□ -0.39
CIITA-212ENST00000618207 ZCWPW1Q9H0M4 648 aa12.63□□□□□ -0.39
CIITA-212ENST00000618207 CATSPERBQ9H7T0 1116 aa12.63□□□□□ -0.39
CIITA-212ENST00000618207 NT5MQ9NPB1 228 aa12.63□□□□□ -0.39
CIITA-212ENST00000618207 ARHGEF3Q9NR81 526 aa12.63□□□□□ -0.39
CIITA-212ENST00000618207 PPARGC1AQ9UBK2 798 aaKnown RBP12.63□□□□□ -0.39
CIITA-212ENST00000618207 SLC2A6Q9UGQ3 507 aa12.63□□□□□ -0.39
CIITA-212ENST00000618207 TRHDEQ9UKU6 1024 aa12.63□□□□□ -0.39
CIITA-212ENST00000618207 PCDHB5Q9Y5E4 795 aa12.63□□□□□ -0.39
CIITA-212ENST00000618207 SCAMP3O14828 347 aaKnown RBP12.63□□□□□ -0.39
CIITA-212ENST00000618207 PHGDHO43175 533 aaKnown RBP12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms