RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 RNF103O00237 685 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 CALCAP01258 141 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 BGNP21810 368 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 ACAT1P24752 427 aaKnown RBP10.42□□□□□ -0.74
VPS39-214ENST00000614932 OPRL1P41146 370 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 MARCKSL1P49006 195 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 COPAP53621 1224 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 NME3Q13232 169 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 UBAP2LQ14157 1087 aaKnown RBP10.42□□□□□ -0.74
VPS39-214ENST00000614932 BMT2Q1RMZ1 405 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 CLVS2Q5SYC1 327 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 B3GNT9Q6UX72 402 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 UNC5AQ6ZN44 842 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 FAM109AQ8N4B1 249 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 FBXL6Q8N531 539 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 GRPEL2Q8TAA5 225 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 SLC39A13Q96H72 371 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 SH3YL1Q96HL8 342 aaPredicted RBP10.42□□□□□ -0.74
VPS39-214ENST00000614932 TMEM79Q9BSE2 394 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 MTMR12Q9C0I1 747 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 CYP4F11Q9HBI6 524 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 PXMP2Q9NR77 195 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 DCAF16Q9NXF7 216 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 GGA3Q9NZ52 723 aa10.42□□□□□ -0.74
VPS39-214ENST00000614932 ATP6V1G2-DDX39BF2Z307 99 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 HDAC3O15379 428 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 MAN1A2O60476 641 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 KRT8P05787 483 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 BACE1P56817 501 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 TGFB2P61812 414 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 CETN1Q12798 172 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 IRF5Q13568 498 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 PSD4Q8NDX1 1056 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 TTLQ8NG68 377 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 GRK7Q8WTQ7 553 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 ALKBH8Q96BT7 664 aaKnown RBP10.41□□□□□ -0.74
VPS39-214ENST00000614932 KCNK16Q96T55 309 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 RIT2Q99578 217 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 NARFLQ9H6Q4 476 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 TAS2R14Q9NYV8 317 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 EIF3LQ9Y262 564 aaKnown RBP10.41□□□□□ -0.74
VPS39-214ENST00000614932 TESMINQ9Y4I5 508 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 PCDHGB3Q9Y5G1 929 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 UBIAD1Q9Y5Z9 338 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 TEX51A0A1B0GUA7 166 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 OR5K3A6NET4 321 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 E5RJQ4 531 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 SLC9A3R1O14745 358 aaPredicted RBP10.41□□□□□ -0.74
VPS39-214ENST00000614932 ICAM2P13598 275 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 PTPRAP18433 802 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 EVI2BP34910 448 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 OR3A3P47888 321 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 AP2S1P53680 142 aaPredicted RBP10.41□□□□□ -0.74
VPS39-214ENST00000614932 POU6F2P78424 691 aaPredicted RBP10.41□□□□□ -0.74
VPS39-214ENST00000614932 MYL7Q01449 175 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 OCA2Q04671 838 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 PMS2P3Q13401 168 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 RAB39AQ14964 217 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 CDK10Q15131 360 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 ATG16L1Q676U5 607 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 LLGL2Q6P1M3 1020 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 CYP20A1Q6UW02 462 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 ANKS1BQ7Z6G8 1248 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 OR10Z1Q8NGY1 313 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 LPAR1Q92633 364 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 RILPQ96NA2 401 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 TM9SF2Q99805 663 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 SLC4A5Q9BY07 1137 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 NAA50Q9GZZ1 169 aaKnown RBP10.41□□□□□ -0.74
VPS39-214ENST00000614932 KCNN2Q9H2S1 579 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 C12orf65Q9H3J6 166 aaKnown RBP10.41□□□□□ -0.74
VPS39-214ENST00000614932 CPNE5Q9HCH3 593 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 PARVAQ9NVD7 372 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 GABBR1Q9UBS5 961 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 ITGA11Q9UKX5 1188 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 VPS4AQ9UN37 437 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 UGT2A1Q9Y4X1 527 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 COMMD10Q9Y6G5 202 aa10.41□□□□□ -0.74
VPS39-214ENST00000614932 AURKAO14965 403 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 PLA2G6O60733 806 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 EPN2O95208 641 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 NADKO95544 446 aaPredicted RBP10.4□□□□□ -0.74
VPS39-214ENST00000614932 NR3C2P08235 984 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 ZNF26P17031 533 aaPredicted RBP10.4□□□□□ -0.74
VPS39-214ENST00000614932 ZNF280AP59817 542 aaPredicted RBP10.4□□□□□ -0.74
VPS39-214ENST00000614932 RACK1P63244 317 aaKnown RBP10.4□□□□□ -0.74
VPS39-214ENST00000614932 PPP3CAQ08209 521 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 CDC20Q12834 499 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 GRSF1Q12849 480 aaKnown RBP eCLIP10.4□□□□□ -0.74
VPS39-214ENST00000614932 SELPLGQ14242 412 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 TMEM132BQ14DG7 1078 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 CARTPTQ16568 116 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 RSBN1Q5VWQ0 802 aaPredicted RBP10.4□□□□□ -0.74
VPS39-214ENST00000614932 SWSAP1Q6NVH7 229 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 DEFB107AQ8IZN7 70 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 LILRA2Q8N149 483 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 BANPQ8N9N5 519 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 MRRFQ96E11 262 aaKnown RBP10.4□□□□□ -0.74
VPS39-214ENST00000614932 ZNF597Q96LX8 424 aa10.4□□□□□ -0.74
VPS39-214ENST00000614932 INTS2Q9H0H0 1204 aaKnown RBP10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms