RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 ANO4Q32M45 955 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 PCDHAC1Q9H158 963 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 ADNPQ9H2P0 1102 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 DNAJB4Q9UDY4 337 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 MYRFQ9Y2G1 1151 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 RAP2CQ9Y3L5 183 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 MRASO14807 208 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 GCATO75600 419 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 GFAPP14136 432 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 ERCC2P18074 760 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 NFKB1P19838 968 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 MAP4P27816 1152 aaKnown RBP12.82□□□□□ -0.36
LIG1-221ENST00000613670 OAZ1P54368 228 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 NR1H2P55055 460 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 ENPEPQ07075 957 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 NSUN2Q08J23 767 aaKnown RBP eCLIP12.82□□□□□ -0.36
LIG1-221ENST00000613670 MTX3Q5HYI7 312 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 LRRC8BQ6P9F7 803 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 PIGZQ86VD9 579 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 PSTKQ8IV42 348 aaKnown RBP12.82□□□□□ -0.36
LIG1-221ENST00000613670 RP9Q8TA86 221 aaKnown RBP12.82□□□□□ -0.36
LIG1-221ENST00000613670 DPEP3Q9H4B8 488 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 PDLIM7Q9NR12 457 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 STK39Q9UEW8 545 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 PCDHB12Q9Y5F1 795 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 TNRC6CQ9HCJ0 1690 aaKnown RBP12.82□□□□□ -0.36
LIG1-221ENST00000613670 KCNU1A8MYU2 1149 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 CLDN5O00501 218 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 TKTL1P51854 596 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 RABGGTBP53611 331 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 SLC44A4Q53GD3 710 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 FOXB2Q5VYV0 432 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 ZNF470Q6ECI4 717 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 CXorf38Q8TB03 319 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 AFG1LQ8WV93 481 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 C18orf25Q96B23 403 aaPredicted RBP12.82□□□□□ -0.36
LIG1-221ENST00000613670 C1orf21Q9H246 121 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 TGFB3P10600 412 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 GRIA3P42263 894 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 XIAPP98170 497 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 SLC10A6Q3KNW5 377 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 TBCELQ5QJ74 424 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 ZNF567Q8N184 647 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 ATPAF2Q8N5M1 289 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 SDCCAG3Q96C92 435 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 ZNF560Q96MR9 790 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 OSMRQ99650 979 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 FICDQ9BVA6 458 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 TSPYL2Q9H2G4 693 aaPredicted RBP12.82□□□□□ -0.36
LIG1-221ENST00000613670 POMKQ9H5K3 350 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 WDCPQ9H6R7 721 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 NOL11Q9H8H0 719 aaKnown RBP12.82□□□□□ -0.36
LIG1-221ENST00000613670 EML4Q9HC35 981 aaKnown RBP12.82□□□□□ -0.36
LIG1-221ENST00000613670 PNPLA8Q9NP80 782 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 CNTN3Q9P232 1028 aa12.82□□□□□ -0.36
LIG1-221ENST00000613670 UBA6A0AVT1 1052 aaPredicted RBP12.81□□□□□ -0.36
LIG1-221ENST00000613670 L1CAMP32004 1257 aa12.81□□□□□ -0.36
LIG1-221ENST00000613670 CDH5P33151 784 aaPredicted RBP12.81□□□□□ -0.36
LIG1-221ENST00000613670 SLC10A2Q12908 348 aaPredicted RBP12.81□□□□□ -0.36
LIG1-221ENST00000613670 GRM3Q14832 879 aa12.81□□□□□ -0.36
LIG1-221ENST00000613670 TLR1Q15399 786 aa12.81□□□□□ -0.36
LIG1-221ENST00000613670 FBXO47Q5MNV8 452 aa12.81□□□□□ -0.36
LIG1-221ENST00000613670 TTC30AQ86WT1 665 aa12.81□□□□□ -0.36
LIG1-221ENST00000613670 PCYOX1LQ8NBM8 494 aa12.81□□□□□ -0.36
LIG1-221ENST00000613670 QKIQ96PU8 341 aaKnown RBP eCLIP12.81□□□□□ -0.36
LIG1-221ENST00000613670 ARHGEF4Q9NR80 690 aa12.81□□□□□ -0.36
LIG1-221ENST00000613670 IPO11Q9UI26 975 aaKnown RBP12.81□□□□□ -0.36
LIG1-221ENST00000613670 PRPF19Q9UMS4 504 aaKnown RBP12.81□□□□□ -0.36
LIG1-221ENST00000613670 C9JVG2 144 aa12.81□□□□□ -0.36
LIG1-221ENST00000613670 H3BSA7 217 aa12.81□□□□□ -0.36
LIG1-221ENST00000613670 CCNT2O60583 730 aaKnown RBP12.81□□□□□ -0.36
LIG1-221ENST00000613670 TIPRLO75663 272 aa12.81□□□□□ -0.36
LIG1-221ENST00000613670 INPP5AQ14642 412 aa12.81□□□□□ -0.36
LIG1-221ENST00000613670 NEDD8Q15843 81 aa12.81□□□□□ -0.36
LIG1-221ENST00000613670 PITRM1Q5JRX3 1037 aa12.81□□□□□ -0.36
LIG1-221ENST00000613670 KLHDC10Q6PID8 442 aa12.81□□□□□ -0.36
LIG1-221ENST00000613670 PABPC5Q96DU9 382 aaKnown RBP12.81□□□□□ -0.36
LIG1-221ENST00000613670 BTBD9Q96Q07 612 aa12.81□□□□□ -0.36
LIG1-221ENST00000613670 CCDC28BQ9BUN5 200 aa12.81□□□□□ -0.36
LIG1-221ENST00000613670 MRPS26Q9BYN8 205 aaKnown RBP12.81□□□□□ -0.36
LIG1-221ENST00000613670 TRIM15Q9C019 465 aa12.81□□□□□ -0.36
LIG1-221ENST00000613670 PDGFCQ9NRA1 345 aa12.81□□□□□ -0.36
LIG1-221ENST00000613670 TBC1D23Q9NUY8 699 aa12.81□□□□□ -0.36
LIG1-221ENST00000613670 HACD1B0YJ81 288 aa12.81□□□□□ -0.36
LIG1-221ENST00000613670 TMEM233B4DJY2 109 aa12.81□□□□□ -0.36
LIG1-221ENST00000613670 PSMD12O00232 456 aaPredicted RBP12.81□□□□□ -0.36
LIG1-221ENST00000613670 ZBTB14O43829 449 aa12.81□□□□□ -0.36
LIG1-221ENST00000613670 TRMUO75648 421 aaKnown RBP12.81□□□□□ -0.36
LIG1-221ENST00000613670 STBD1O95210 358 aa12.81□□□□□ -0.36
LIG1-221ENST00000613670 PAOXQ6QHF9 649 aa12.81□□□□□ -0.36
LIG1-221ENST00000613670 FAM47BQ8NA70 645 aa12.81□□□□□ -0.36
LIG1-221ENST00000613670 EGFL7Q9UHF1 273 aa12.81□□□□□ -0.36
LIG1-221ENST00000613670 MYH9P35579 1960 aaKnown RBP12.8□□□□□ -0.36
LIG1-221ENST00000613670 GRM1Q13255 1194 aa12.8□□□□□ -0.36
LIG1-221ENST00000613670 SOWAHAQ2M3V2 549 aa12.8□□□□□ -0.36
LIG1-221ENST00000613670 TEX44Q53QW1 395 aa12.8□□□□□ -0.36
LIG1-221ENST00000613670 LIPMQ5VYY2 423 aa12.8□□□□□ -0.36
LIG1-221ENST00000613670 DCPSQ96C86 337 aaKnown RBP12.8□□□□□ -0.36
LIG1-221ENST00000613670 TUBGCP3Q96CW5 907 aa12.8□□□□□ -0.36
LIG1-221ENST00000613670 PKP2Q99959 881 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms