RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 OLFM3Q96PB7 478 aa15.56■□□□□ 0.08
UPF1-204ENST00000596842 FAM192AQ9GZU8 254 aa15.56■□□□□ 0.08
UPF1-204ENST00000596842 C1orf21Q9H246 121 aa15.56■□□□□ 0.08
UPF1-204ENST00000596842 MORF4L1Q9UBU8 362 aa15.56■□□□□ 0.08
UPF1-204ENST00000596842 ZBTB24O43167 697 aaPredicted RBP15.56■□□□□ 0.08
UPF1-204ENST00000596842 USP2O75604 605 aaPredicted RBP15.56■□□□□ 0.08
UPF1-204ENST00000596842 CLPTM1O96005 669 aa15.56■□□□□ 0.08
UPF1-204ENST00000596842 IL1BP01584 269 aa15.56■□□□□ 0.08
UPF1-204ENST00000596842 JUNP05412 331 aaKnown RBP15.56■□□□□ 0.08
UPF1-204ENST00000596842 CHN2P52757 468 aa15.56■□□□□ 0.08
UPF1-204ENST00000596842 NIPAL4Q0D2K0 466 aa15.56■□□□□ 0.08
UPF1-204ENST00000596842 INCA1Q0VD86 236 aa15.56■□□□□ 0.08
UPF1-204ENST00000596842 PDK1Q15118 436 aa15.56■□□□□ 0.08
UPF1-204ENST00000596842 LSM12Q3MHD2 195 aaKnown RBP15.56■□□□□ 0.08
UPF1-204ENST00000596842 ARL13AQ5H913 290 aaPredicted RBP15.56■□□□□ 0.08
UPF1-204ENST00000596842 KCNMB4Q86W47 210 aa15.56■□□□□ 0.08
UPF1-204ENST00000596842 BEST2Q8NFU1 509 aa15.56■□□□□ 0.08
UPF1-204ENST00000596842 PPWD1Q96BP3 646 aaKnown RBP15.56■□□□□ 0.08
UPF1-204ENST00000596842 KIAA1257Q9ULG3 409 aa15.56■□□□□ 0.08
UPF1-204ENST00000596842 TSPAN8P19075 237 aa15.55■□□□□ 0.08
UPF1-204ENST00000596842 RXRBP28702 533 aa15.55■□□□□ 0.08
UPF1-204ENST00000596842 MAGEA3P43357 314 aa15.55■□□□□ 0.08
UPF1-204ENST00000596842 SERPINB8P50452 374 aa15.55■□□□□ 0.08
UPF1-204ENST00000596842 BCAT1P54687 386 aa15.55■□□□□ 0.08
UPF1-204ENST00000596842 TPI1P60174 286 aa15.55■□□□□ 0.08
UPF1-204ENST00000596842 TLR1Q15399 786 aa15.55■□□□□ 0.08
UPF1-204ENST00000596842 SEL1L3Q68CR1 1132 aa15.55■□□□□ 0.08
UPF1-204ENST00000596842 CYP2R1Q6VVX0 501 aa15.55■□□□□ 0.08
UPF1-204ENST00000596842 DSELQ8IZU8 1212 aa15.55■□□□□ 0.08
UPF1-204ENST00000596842 ZNF112Q9UJU3 913 aa15.55■□□□□ 0.08
UPF1-204ENST00000596842 RECQL4O94761 1208 aa15.55■□□□□ 0.08
UPF1-204ENST00000596842 CYP2C8P10632 490 aa15.55■□□□□ 0.08
UPF1-204ENST00000596842 HNRNPLP14866 589 aaKnown RBP eCLIP15.55■□□□□ 0.08
UPF1-204ENST00000596842 ERCC2P18074 760 aa15.55■□□□□ 0.08
UPF1-204ENST00000596842 DMPKQ09013 629 aa15.55■□□□□ 0.08
UPF1-204ENST00000596842 AAGABQ6PD74 315 aa15.55■□□□□ 0.08
UPF1-204ENST00000596842 UTS2BQ765I0 119 aa15.55■□□□□ 0.08
UPF1-204ENST00000596842 PQLC1Q8N2U9 271 aa15.55■□□□□ 0.08
UPF1-204ENST00000596842 KYQ8NBH2 561 aa15.55■□□□□ 0.08
UPF1-204ENST00000596842 ACE2Q9BYF1 805 aaPredicted RBP15.55■□□□□ 0.08
UPF1-204ENST00000596842 LRRC40Q9H9A6 602 aa15.55■□□□□ 0.08
UPF1-204ENST00000596842 PIN4Q9Y237 131 aaKnown RBP15.55■□□□□ 0.08
UPF1-204ENST00000596842 XPO1O14980 1071 aaKnown RBP15.55■□□□□ 0.08
UPF1-204ENST00000596842 CCNT2O60583 730 aaKnown RBP15.55■□□□□ 0.08
UPF1-204ENST00000596842 BEST1O76090 585 aa15.55■□□□□ 0.08
UPF1-204ENST00000596842 RPS12P25398 132 aaKnown RBP15.55■□□□□ 0.08
UPF1-204ENST00000596842 GALK1P51570 392 aa15.55■□□□□ 0.08
UPF1-204ENST00000596842 NME5P56597 212 aa15.55■□□□□ 0.08
UPF1-204ENST00000596842 CYLC2Q14093 348 aaPredicted RBP15.55■□□□□ 0.08
UPF1-204ENST00000596842 FAM91A1Q658Y4 838 aa15.55■□□□□ 0.08
UPF1-204ENST00000596842 BNC2Q6ZN30 1099 aaPredicted RBP15.55■□□□□ 0.08
UPF1-204ENST00000596842 EXT2Q93063 718 aa15.55■□□□□ 0.08
UPF1-204ENST00000596842 VPS39Q96JC1 886 aa15.55■□□□□ 0.08
UPF1-204ENST00000596842 CDHR5Q9HBB8 845 aa15.55■□□□□ 0.08
UPF1-204ENST00000596842 PHIPQ8WWQ0 1821 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 SF3B1O75533 1304 aaKnown RBP eCLIP15.54■□□□□ 0.08
UPF1-204ENST00000596842 NEMP2A6NFY4 417 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 H3BRB1 525 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 TMCC1O94876 653 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 NCAM1P13591 858 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 GRM3Q14832 879 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 ANKRD20A4Q4UJ75 823 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 RARS2Q5T160 578 aaKnown RBP15.54■□□□□ 0.08
UPF1-204ENST00000596842 ZNF280DQ6N043 979 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 SLC41A1Q8IVJ1 513 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 APLFQ8IW19 511 aaPredicted RBP15.54■□□□□ 0.08
UPF1-204ENST00000596842 NAT14Q8WUY8 206 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 CPNE1Q99829 537 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 TUT1Q9H6E5 874 aaKnown RBP15.54■□□□□ 0.08
UPF1-204ENST00000596842 ANLNQ9NQW6 1124 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 SORCS3Q9UPU3 1222 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 DFFAO00273 331 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 PRKCGP05129 697 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 HDCP19113 662 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 NFKB1P19838 968 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 EDNRBP24530 442 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 NMBRP28336 390 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 TKTP29401 623 aaKnown RBP15.54■□□□□ 0.08
UPF1-204ENST00000596842 CBX3Q13185 183 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 TMC7Q7Z402 723 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 IPMKQ8NFU5 416 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 ACMSDQ8TDX5 336 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 SERPINI1Q99574 410 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 VPS33BQ9H267 617 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 CHST12Q9NRB3 414 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 AP4B1Q9Y6B7 739 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 FBXO47Q5MNV8 452 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 APPL2Q8NEU8 664 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 JADE3Q92613 823 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 APBB2Q92870 758 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 EME1Q96AY2 570 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 RBBP8Q99708 897 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 IL1RL2Q9HB29 575 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 DMAP1Q9NPF5 467 aaPredicted RBP15.54■□□□□ 0.08
UPF1-204ENST00000596842 DDIT4Q9NX09 232 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 DNAJC28Q9NX36 388 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 DDX43Q9NXZ2 648 aaKnown RBP15.54■□□□□ 0.08
UPF1-204ENST00000596842 DOLKQ9UPQ8 538 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 PCDHB12Q9Y5F1 795 aa15.54■□□□□ 0.08
UPF1-204ENST00000596842 HUS1O60921 280 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms