RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 CFIP05156 583 aa15.5■□□□□ 0.07
TRIM28-205ENST00000595028 ADRA1BP35368 520 aa15.5■□□□□ 0.07
TRIM28-205ENST00000595028 ZNF143P52747 638 aaPredicted RBP15.5■□□□□ 0.07
TRIM28-205ENST00000595028 UBASH3AP57075 661 aa15.5■□□□□ 0.07
TRIM28-205ENST00000595028 RPL7AP62424 266 aaKnown RBP15.5■□□□□ 0.07
TRIM28-205ENST00000595028 IRX4P78413 519 aa15.5■□□□□ 0.07
TRIM28-205ENST00000595028 ELAVL3Q14576 367 aaKnown RBP15.5■□□□□ 0.07
TRIM28-205ENST00000595028 CST6Q15828 149 aa15.5■□□□□ 0.07
TRIM28-205ENST00000595028 DUOXA1Q1HG43 343 aa15.5■□□□□ 0.07
TRIM28-205ENST00000595028 SYCP2LQ5T4T6 812 aa15.5■□□□□ 0.07
TRIM28-205ENST00000595028 MANEALQ5VSG8 457 aa15.5■□□□□ 0.07
TRIM28-205ENST00000595028 ZNF571Q7Z3V5 609 aaPredicted RBP15.5■□□□□ 0.07
TRIM28-205ENST00000595028 RGL4Q8IZJ4 473 aa15.5■□□□□ 0.07
TRIM28-205ENST00000595028 DCAF4L2Q8NA75 395 aa15.5■□□□□ 0.07
TRIM28-205ENST00000595028 CEP76Q8TAP6 659 aa15.5■□□□□ 0.07
TRIM28-205ENST00000595028 PTPRN2Q92932 1015 aa15.5■□□□□ 0.07
TRIM28-205ENST00000595028 VCPIP1Q96JH7 1222 aa15.5■□□□□ 0.07
TRIM28-205ENST00000595028 PSMB7Q99436 277 aa15.5■□□□□ 0.07
TRIM28-205ENST00000595028 C2orf49Q9BVC5 232 aaPredicted RBP15.5■□□□□ 0.07
TRIM28-205ENST00000595028 NUSAP1Q9BXS6 441 aaKnown RBP15.5■□□□□ 0.07
TRIM28-205ENST00000595028 CAPN10Q9HC96 672 aa15.5■□□□□ 0.07
TRIM28-205ENST00000595028 PPARGC1AQ9UBK2 798 aaKnown RBP15.5■□□□□ 0.07
TRIM28-205ENST00000595028 SUSD2Q9UGT4 822 aa15.5■□□□□ 0.07
TRIM28-205ENST00000595028 ASH1LQ9NR48 2969 aaKnown RBP15.49■□□□□ 0.07
TRIM28-205ENST00000595028 TMCO5BA8MYB1 307 aa15.49■□□□□ 0.07
TRIM28-205ENST00000595028 GIPC1O14908 333 aa15.49■□□□□ 0.07
TRIM28-205ENST00000595028 ATP9BO43861 1147 aa15.49■□□□□ 0.07
TRIM28-205ENST00000595028 SERPINF2P08697 491 aa15.49■□□□□ 0.07
TRIM28-205ENST00000595028 VAV1P15498 845 aa15.49■□□□□ 0.07
TRIM28-205ENST00000595028 ACSL1P33121 698 aa15.49■□□□□ 0.07
TRIM28-205ENST00000595028 PSMD8P48556 350 aa15.49■□□□□ 0.07
TRIM28-205ENST00000595028 NOVA1P51513 510 aaKnown RBP15.49■□□□□ 0.07
TRIM28-205ENST00000595028 KLHL30Q0D2K2 578 aa15.49■□□□□ 0.07
TRIM28-205ENST00000595028 SCAPQ12770 1279 aa15.49■□□□□ 0.07
TRIM28-205ENST00000595028 DCUN1D2Q6PH85 259 aa15.49■□□□□ 0.07
TRIM28-205ENST00000595028 ZNF783Q6ZMS7 281 aa15.49■□□□□ 0.07
TRIM28-205ENST00000595028 USP30Q70CQ3 517 aa15.49■□□□□ 0.07
TRIM28-205ENST00000595028 MMAAQ8IVH4 418 aaKnown RBP15.49■□□□□ 0.07
TRIM28-205ENST00000595028 STK40Q8N2I9 435 aa15.49■□□□□ 0.07
TRIM28-205ENST00000595028 FRS2Q8WU20 508 aa15.49■□□□□ 0.07
TRIM28-205ENST00000595028 DNASE2BQ8WZ79 361 aa15.49■□□□□ 0.07
TRIM28-205ENST00000595028 BTBD1Q9H0C5 482 aa15.49■□□□□ 0.07
TRIM28-205ENST00000595028 OSBPL2Q9H1P3 480 aa15.49■□□□□ 0.07
TRIM28-205ENST00000595028 TMEM9BQ9NQ34 198 aa15.49■□□□□ 0.07
TRIM28-205ENST00000595028 OR12D3Q9UGF7 316 aa15.49■□□□□ 0.07
TRIM28-205ENST00000595028 VPS51Q9UID3 782 aa15.49■□□□□ 0.07
TRIM28-205ENST00000595028 SLC6A14Q9UN76 642 aa15.49■□□□□ 0.07
TRIM28-205ENST00000595028 NEU3Q9UQ49 428 aa15.49■□□□□ 0.07
TRIM28-205ENST00000595028 HS3ST2Q9Y278 367 aa15.49■□□□□ 0.07
TRIM28-205ENST00000595028 A0A0D9SEW6 157 aa15.48■□□□□ 0.07
TRIM28-205ENST00000595028 ILVBLA1L0T0 632 aa15.48■□□□□ 0.07
TRIM28-205ENST00000595028 C4orf47A7E2U8 309 aa15.48■□□□□ 0.07
TRIM28-205ENST00000595028 METTL12A8MUP2 240 aa15.48■□□□□ 0.07
TRIM28-205ENST00000595028 DDX3XO00571 662 aaKnown RBP eCLIP15.48■□□□□ 0.07
TRIM28-205ENST00000595028 MID1O15344 667 aa15.48■□□□□ 0.07
TRIM28-205ENST00000595028 ATMINO43313 823 aaPredicted RBP15.48■□□□□ 0.07
TRIM28-205ENST00000595028 SNAP91O60641 907 aa15.48■□□□□ 0.07
TRIM28-205ENST00000595028 SEMA4FO95754 770 aa15.48■□□□□ 0.07
TRIM28-205ENST00000595028 TOP3BO95985 862 aaKnown RBP15.48■□□□□ 0.07
TRIM28-205ENST00000595028 GZMAP12544 262 aa15.48■□□□□ 0.07
TRIM28-205ENST00000595028 ENGP17813 658 aa15.48■□□□□ 0.07
TRIM28-205ENST00000595028 OR1E1P30953 314 aa15.48■□□□□ 0.07
TRIM28-205ENST00000595028 KRT83P78385 493 aa15.48■□□□□ 0.07
TRIM28-205ENST00000595028 ZNF252P-AS1Q0IIN9 211 aa15.48■□□□□ 0.07
TRIM28-205ENST00000595028 SFSWAPQ12872 951 aaKnown RBP15.48■□□□□ 0.07
TRIM28-205ENST00000595028 DCAF12L1Q5VU92 463 aa15.48■□□□□ 0.07
TRIM28-205ENST00000595028 ZCCHC9Q8N567 271 aaKnown RBP15.48■□□□□ 0.07
TRIM28-205ENST00000595028 SH2D3CQ8N5H7 860 aa15.48■□□□□ 0.07
TRIM28-205ENST00000595028 GATA6Q92908 595 aa15.48■□□□□ 0.07
TRIM28-205ENST00000595028 IQCDQ96DY2 449 aa15.48■□□□□ 0.07
TRIM28-205ENST00000595028 FAM129BQ96TA1 746 aa15.48■□□□□ 0.07
TRIM28-205ENST00000595028 CNPY3Q9BT09 278 aa15.48■□□□□ 0.07
TRIM28-205ENST00000595028 C6orf106Q9H6K1 298 aaPredicted RBP15.48■□□□□ 0.07
TRIM28-205ENST00000595028 SGK2Q9HBY8 427 aa15.48■□□□□ 0.07
TRIM28-205ENST00000595028 FBXL12Q9NXK8 326 aa15.48■□□□□ 0.07
TRIM28-205ENST00000595028 IFNKQ9P0W0 207 aa15.48■□□□□ 0.07
TRIM28-205ENST00000595028 SERGEFQ9UGK8 458 aa15.48■□□□□ 0.07
TRIM28-205ENST00000595028 IGSF10Q6WRI0 2623 aa15.47■□□□□ 0.07
TRIM28-205ENST00000595028 A0A1W2PP55 124 aa15.47■□□□□ 0.07
TRIM28-205ENST00000595028 FAM72CH0Y354 149 aa15.47■□□□□ 0.07
TRIM28-205ENST00000595028 CDX4O14627 284 aaPredicted RBP15.47■□□□□ 0.07
TRIM28-205ENST00000595028 LRIG2O94898 1065 aa15.47■□□□□ 0.07
TRIM28-205ENST00000595028 ADH1BP00325 375 aa15.47■□□□□ 0.07
TRIM28-205ENST00000595028 PLEKP08567 350 aaPredicted RBP15.47■□□□□ 0.07
TRIM28-205ENST00000595028 SKILP12757 684 aa15.47■□□□□ 0.07
TRIM28-205ENST00000595028 SRCP12931 536 aa15.47■□□□□ 0.07
TRIM28-205ENST00000595028 GNSP15586 552 aa15.47■□□□□ 0.07
TRIM28-205ENST00000595028 MAOBP27338 520 aa15.47■□□□□ 0.07
TRIM28-205ENST00000595028 OGDHQ02218 1023 aa15.47■□□□□ 0.07
TRIM28-205ENST00000595028 GFPT1Q06210 699 aaPredicted RBP15.47■□□□□ 0.07
TRIM28-205ENST00000595028 MAMLD1Q13495 774 aa15.47■□□□□ 0.07
TRIM28-205ENST00000595028 DLG2Q15700 870 aa15.47■□□□□ 0.07
TRIM28-205ENST00000595028 TDRD12Q587J7 1177 aaKnown RBP15.47■□□□□ 0.07
TRIM28-205ENST00000595028 FAM72AQ5TYM5 149 aa15.47■□□□□ 0.07
TRIM28-205ENST00000595028 HGSNATQ68CP4 663 aa15.47■□□□□ 0.07
TRIM28-205ENST00000595028 PLEKHA7Q6IQ23 1121 aa15.47■□□□□ 0.07
TRIM28-205ENST00000595028 FAM72DQ6L9T8 149 aa15.47■□□□□ 0.07
TRIM28-205ENST00000595028 Q6ZVU0 165 aa15.47■□□□□ 0.07
TRIM28-205ENST00000595028 SLFN11Q7Z7L1 901 aa15.47■□□□□ 0.07
TRIM28-205ENST00000595028 NLRP14Q86W24 1093 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms