RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 LCA5LO95447 670 aa15.38■□□□□ 0.05
UPF1-202ENST00000594243 DNTTP04053 509 aa15.38■□□□□ 0.05
UPF1-202ENST00000594243 RETP07949 1114 aa15.38■□□□□ 0.05
UPF1-202ENST00000594243 C7P10643 843 aa15.38■□□□□ 0.05
UPF1-202ENST00000594243 OXTRP30559 389 aa15.38■□□□□ 0.05
UPF1-202ENST00000594243 ARHGAP25P42331 645 aa15.38■□□□□ 0.05
UPF1-202ENST00000594243 SSR1P43307 286 aaKnown RBP15.38■□□□□ 0.05
UPF1-202ENST00000594243 CLCN6P51797 869 aa15.38■□□□□ 0.05
UPF1-202ENST00000594243 YBEYP58557 167 aaPredicted RBP15.38■□□□□ 0.05
UPF1-202ENST00000594243 SFSWAPQ12872 951 aaKnown RBP15.38■□□□□ 0.05
UPF1-202ENST00000594243 DLG2Q15700 870 aa15.38■□□□□ 0.05
UPF1-202ENST00000594243 CA9Q16790 459 aa15.38■□□□□ 0.05
UPF1-202ENST00000594243 PPP6R3Q5H9R7 873 aaPredicted RBP15.38■□□□□ 0.05
UPF1-202ENST00000594243 KCNT1Q5JUK3 1230 aa15.38■□□□□ 0.05
UPF1-202ENST00000594243 SPDYCQ5MJ68 293 aa15.38■□□□□ 0.05
UPF1-202ENST00000594243 DAB2IPQ5VWQ8 1189 aa15.38■□□□□ 0.05
UPF1-202ENST00000594243 ZNF776Q68DI1 518 aaPredicted RBP15.38■□□□□ 0.05
UPF1-202ENST00000594243 CYP4V2Q6ZWL3 525 aaPredicted RBP15.38■□□□□ 0.05
UPF1-202ENST00000594243 LPCAT2Q7L5N7 544 aa15.38■□□□□ 0.05
UPF1-202ENST00000594243 TEKT4Q8WW24 435 aa15.38■□□□□ 0.05
UPF1-202ENST00000594243 ARHGEF2Q92974 986 aaKnown RBP15.38■□□□□ 0.05
UPF1-202ENST00000594243 HINFPQ9BQA5 517 aa15.38■□□□□ 0.05
UPF1-202ENST00000594243 ACE2Q9BYF1 805 aaPredicted RBP15.38■□□□□ 0.05
UPF1-202ENST00000594243 RSPH9Q9H1X1 276 aaPredicted RBP15.38■□□□□ 0.05
UPF1-202ENST00000594243 MTG2Q9H4K7 406 aa15.38■□□□□ 0.05
UPF1-202ENST00000594243 OSGEPQ9NPF4 335 aa15.38■□□□□ 0.05
UPF1-202ENST00000594243 SCML1Q9UN30 329 aa15.38■□□□□ 0.05
UPF1-202ENST00000594243 CYP8B1Q9UNU6 501 aa15.38■□□□□ 0.05
UPF1-202ENST00000594243 MUC22E2RYF6 1773 aaPredicted RBP15.37■□□□□ 0.05
UPF1-202ENST00000594243 IGHV1OR15-9A0A0B4J2B8 117 aa15.37■□□□□ 0.05
UPF1-202ENST00000594243 SNAP91O60641 907 aa15.37■□□□□ 0.05
UPF1-202ENST00000594243 IPO7O95373 1038 aaKnown RBP15.37■□□□□ 0.05
UPF1-202ENST00000594243 RARAP10276 462 aa15.37■□□□□ 0.05
UPF1-202ENST00000594243 SRCP12931 536 aa15.37■□□□□ 0.05
UPF1-202ENST00000594243 FECHP22830 423 aa15.37■□□□□ 0.05
UPF1-202ENST00000594243 IL1R2P27930 398 aa15.37■□□□□ 0.05
UPF1-202ENST00000594243 ARL4AP40617 200 aa15.37■□□□□ 0.05
UPF1-202ENST00000594243 TPMTP51580 245 aa15.37■□□□□ 0.05
UPF1-202ENST00000594243 GEMIN4P57678 1058 aaKnown RBP15.37■□□□□ 0.05
UPF1-202ENST00000594243 RPS14P62263 151 aaKnown RBP15.37■□□□□ 0.05
UPF1-202ENST00000594243 TCEAL1Q15170 157 aa15.37■□□□□ 0.05
UPF1-202ENST00000594243 DPYSL2Q16555 572 aa15.37■□□□□ 0.05
UPF1-202ENST00000594243 RFX8Q6ZV50 586 aa15.37■□□□□ 0.05
UPF1-202ENST00000594243 UMODL1-AS1Q8N2C9 162 aa15.37■□□□□ 0.05
UPF1-202ENST00000594243 FRS2Q8WU20 508 aa15.37■□□□□ 0.05
UPF1-202ENST00000594243 RFFLQ8WZ73 363 aa15.37■□□□□ 0.05
UPF1-202ENST00000594243 HSPH1Q92598 858 aa15.37■□□□□ 0.05
UPF1-202ENST00000594243 CCDC114Q96M63 670 aa15.37■□□□□ 0.05
UPF1-202ENST00000594243 KCTD15Q96SI1 283 aaPredicted RBP15.37■□□□□ 0.05
UPF1-202ENST00000594243 USP36Q9P275 1121 aaKnown RBP15.37■□□□□ 0.05
UPF1-202ENST00000594243 FARP1Q9Y4F1 1045 aaPredicted RBP15.37■□□□□ 0.05
UPF1-202ENST00000594243 EPN1Q9Y6I3 576 aaPredicted RBP15.37■□□□□ 0.05
UPF1-202ENST00000594243 H3BRJ5 948 aa15.36■□□□□ 0.05
UPF1-202ENST00000594243 KDELR3O43731 214 aa15.36■□□□□ 0.05
UPF1-202ENST00000594243 NDUFS2O75306 463 aa15.36■□□□□ 0.05
UPF1-202ENST00000594243 ZMPSTE24O75844 475 aa15.36■□□□□ 0.05
UPF1-202ENST00000594243 MTA2O94776 668 aa15.36■□□□□ 0.05
UPF1-202ENST00000594243 MT-CO1P00395 513 aa15.36■□□□□ 0.05
UPF1-202ENST00000594243 IGLV3-19P01714 112 aa15.36■□□□□ 0.05
UPF1-202ENST00000594243 TCF4P15884 667 aa15.36■□□□□ 0.05
UPF1-202ENST00000594243 GOT1P17174 413 aa15.36■□□□□ 0.05
UPF1-202ENST00000594243 BCKDHBP21953 392 aa15.36■□□□□ 0.05
UPF1-202ENST00000594243 CD6P30203 668 aa15.36■□□□□ 0.05
UPF1-202ENST00000594243 MAN1A1P33908 653 aa15.36■□□□□ 0.05
UPF1-202ENST00000594243 ACVRL1P37023 503 aa15.36■□□□□ 0.05
UPF1-202ENST00000594243 NDST2P52849 883 aa15.36■□□□□ 0.05
UPF1-202ENST00000594243 RPL6Q02878 288 aaKnown RBP15.36■□□□□ 0.05
UPF1-202ENST00000594243 SLC25A11Q02978 314 aaKnown RBP15.36■□□□□ 0.05
UPF1-202ENST00000594243 ELAVL3Q14576 367 aaKnown RBP15.36■□□□□ 0.05
UPF1-202ENST00000594243 MESDQ14696 234 aa15.36■□□□□ 0.05
UPF1-202ENST00000594243 SMTNL2Q2TAL5 461 aa15.36■□□□□ 0.05
UPF1-202ENST00000594243 PARP15Q460N3 678 aa15.36■□□□□ 0.05
UPF1-202ENST00000594243 TTC31Q49AM3 519 aaPredicted RBP15.36■□□□□ 0.05
UPF1-202ENST00000594243 PMS2CLQ68D20 193 aa15.36■□□□□ 0.05
UPF1-202ENST00000594243 LINGO4Q6UY18 593 aa15.36■□□□□ 0.05
UPF1-202ENST00000594243 DSG4Q86SJ6 1040 aa15.36■□□□□ 0.05
UPF1-202ENST00000594243 ZNF354CQ86Y25 554 aa15.36■□□□□ 0.05
UPF1-202ENST00000594243 GPR161Q8N6U8 529 aaKnown RBP15.36■□□□□ 0.05
UPF1-202ENST00000594243 FRMD1Q8N878 549 aa15.36■□□□□ 0.05
UPF1-202ENST00000594243 SPC24Q8NBT2 197 aa15.36■□□□□ 0.05
UPF1-202ENST00000594243 FAM129BQ96TA1 746 aa15.36■□□□□ 0.05
UPF1-202ENST00000594243 BAG1Q99933 345 aaPredicted RBP15.36■□□□□ 0.05
UPF1-202ENST00000594243 STAU2Q9NUL3 570 aaKnown RBP eCLIP15.36■□□□□ 0.05
UPF1-202ENST00000594243 CWC15Q9P013 229 aaKnown RBP15.36■□□□□ 0.05
UPF1-202ENST00000594243 MBD1Q9UIS9 605 aaPredicted RBP15.36■□□□□ 0.05
UPF1-202ENST00000594243 NCKAP1Q9Y2A7 1128 aa15.36■□□□□ 0.05
UPF1-202ENST00000594243 PCDHA13Q9Y5I0 950 aa15.36■□□□□ 0.05
UPF1-202ENST00000594243 ZSCAN5CA6NGD5 496 aaPredicted RBP15.35■□□□□ 0.05
UPF1-202ENST00000594243 MCF2LO15068 1137 aa15.35■□□□□ 0.05
UPF1-202ENST00000594243 ALOX15BO15296 676 aa15.35■□□□□ 0.05
UPF1-202ENST00000594243 LRP3O75074 770 aa15.35■□□□□ 0.05
UPF1-202ENST00000594243 NDUFA10O95299 355 aa15.35■□□□□ 0.05
UPF1-202ENST00000594243 KRT7P08729 469 aa15.35■□□□□ 0.05
UPF1-202ENST00000594243 ERCC2P18074 760 aa15.35■□□□□ 0.05
UPF1-202ENST00000594243 GLDCP23378 1020 aa15.35■□□□□ 0.05
UPF1-202ENST00000594243 ARF5P84085 180 aa15.35■□□□□ 0.05
UPF1-202ENST00000594243 MMAAQ8IVH4 418 aaKnown RBP15.35■□□□□ 0.05
UPF1-202ENST00000594243 STK40Q8N2I9 435 aa15.35■□□□□ 0.05
UPF1-202ENST00000594243 LZTR1Q8N653 840 aa15.35■□□□□ 0.05
UPF1-202ENST00000594243 OR8D1Q8WZ84 308 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms