RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 RNASEH1O60930 286 aaKnown RBP12.18□□□□□ -0.46
LIG3-213ENST00000590630 SIN3BO75182 1162 aa12.18□□□□□ -0.46
LIG3-213ENST00000590630 PROSCO94903 275 aa12.18□□□□□ -0.46
LIG3-213ENST00000590630 LCA5LO95447 670 aa12.18□□□□□ -0.46
LIG3-213ENST00000590630 IGLV3-19P01714 112 aa12.18□□□□□ -0.46
LIG3-213ENST00000590630 RETP07949 1114 aa12.18□□□□□ -0.46
LIG3-213ENST00000590630 ACADMP11310 421 aa12.18□□□□□ -0.46
LIG3-213ENST00000590630 MAN1A1P33908 653 aa12.18□□□□□ -0.46
LIG3-213ENST00000590630 CYLC1P35663 651 aaPredicted RBP12.18□□□□□ -0.46
LIG3-213ENST00000590630 PI4KAP42356 2102 aa12.18□□□□□ -0.46
LIG3-213ENST00000590630 CLCN6P51797 869 aa12.18□□□□□ -0.46
LIG3-213ENST00000590630 GEMIN4P57678 1058 aaKnown RBP12.18□□□□□ -0.46
LIG3-213ENST00000590630 SLC20A2Q08357 652 aa12.18□□□□□ -0.46
LIG3-213ENST00000590630 ELAVL3Q14576 367 aaKnown RBP12.18□□□□□ -0.46
LIG3-213ENST00000590630 DPYSL2Q16555 572 aa12.18□□□□□ -0.46
LIG3-213ENST00000590630 LPAL2Q16609 132 aa12.18□□□□□ -0.46
LIG3-213ENST00000590630 PPP6R3Q5H9R7 873 aaPredicted RBP12.18□□□□□ -0.46
LIG3-213ENST00000590630 SPDYCQ5MJ68 293 aa12.18□□□□□ -0.46
LIG3-213ENST00000590630 DAB2IPQ5VWQ8 1189 aa12.18□□□□□ -0.46
LIG3-213ENST00000590630 PMS2CLQ68D20 193 aa12.18□□□□□ -0.46
LIG3-213ENST00000590630 ZNF776Q68DI1 518 aaPredicted RBP12.18□□□□□ -0.46
LIG3-213ENST00000590630 IL31Q6EBC2 164 aa12.18□□□□□ -0.46
LIG3-213ENST00000590630 RETSATQ6NUM9 610 aa12.18□□□□□ -0.46
LIG3-213ENST00000590630 SLC36A4Q6YBV0 504 aa12.18□□□□□ -0.46
LIG3-213ENST00000590630 TMTC1Q8IUR5 882 aa12.18□□□□□ -0.46
LIG3-213ENST00000590630 OR7D4Q8NG98 312 aa12.18□□□□□ -0.46
LIG3-213ENST00000590630 SLC35G2Q8TBE7 412 aa12.18□□□□□ -0.46
LIG3-213ENST00000590630 FRS2Q8WU20 508 aa12.18□□□□□ -0.46
LIG3-213ENST00000590630 RFFLQ8WZ73 363 aa12.18□□□□□ -0.46
LIG3-213ENST00000590630 PTPRN2Q92932 1015 aa12.18□□□□□ -0.46
LIG3-213ENST00000590630 HINFPQ9BQA5 517 aa12.18□□□□□ -0.46
LIG3-213ENST00000590630 SPON2Q9BUD6 331 aa12.18□□□□□ -0.46
LIG3-213ENST00000590630 ACE2Q9BYF1 805 aaPredicted RBP12.18□□□□□ -0.46
LIG3-213ENST00000590630 DUSP15Q9H1R2 295 aaPredicted RBP12.18□□□□□ -0.46
LIG3-213ENST00000590630 ZWILCHQ9H900 591 aa12.18□□□□□ -0.46
LIG3-213ENST00000590630 LUC7LQ9NQ29 371 aaKnown RBP12.18□□□□□ -0.46
LIG3-213ENST00000590630 ITM2CQ9NQX7 267 aa12.18□□□□□ -0.46
LIG3-213ENST00000590630 NDFIP2Q9NV92 336 aa12.18□□□□□ -0.46
LIG3-213ENST00000590630 GPATCH2LQ9NWQ4 482 aa12.18□□□□□ -0.46
LIG3-213ENST00000590630 HPCAL4Q9UM19 191 aa12.18□□□□□ -0.46
LIG3-213ENST00000590630 INVSQ9Y283 1065 aa12.18□□□□□ -0.46
LIG3-213ENST00000590630 NUMA1Q14980 2115 aa12.17□□□□□ -0.46
LIG3-213ENST00000590630 IGHV1OR15-9A0A0B4J2B8 117 aa12.17□□□□□ -0.46
LIG3-213ENST00000590630 EEF2KO00418 725 aaKnown RBP12.17□□□□□ -0.46
LIG3-213ENST00000590630 SNAP91O60641 907 aa12.17□□□□□ -0.46
LIG3-213ENST00000590630 LRP3O75074 770 aa12.17□□□□□ -0.46
LIG3-213ENST00000590630 ZMPSTE24O75844 475 aa12.17□□□□□ -0.46
LIG3-213ENST00000590630 MTA2O94776 668 aa12.17□□□□□ -0.46
LIG3-213ENST00000590630 DNTTP04053 509 aa12.17□□□□□ -0.46
LIG3-213ENST00000590630 SRCP12931 536 aa12.17□□□□□ -0.46
LIG3-213ENST00000590630 TCF4P15884 667 aa12.17□□□□□ -0.46
LIG3-213ENST00000590630 BCKDHBP21953 392 aa12.17□□□□□ -0.46
LIG3-213ENST00000590630 IL1R2P27930 398 aa12.17□□□□□ -0.46
LIG3-213ENST00000590630 OXTRP30559 389 aa12.17□□□□□ -0.46
LIG3-213ENST00000590630 ARHGAP25P42331 645 aa12.17□□□□□ -0.46
LIG3-213ENST00000590630 HCAR3P49019 387 aa12.17□□□□□ -0.46
LIG3-213ENST00000590630 TPMTP51580 245 aa12.17□□□□□ -0.46
LIG3-213ENST00000590630 YBEYP58557 167 aaPredicted RBP12.17□□□□□ -0.46
LIG3-213ENST00000590630 SLC25A11Q02978 314 aaKnown RBP12.17□□□□□ -0.46
LIG3-213ENST00000590630 POLD3Q15054 466 aaPredicted RBP12.17□□□□□ -0.46
LIG3-213ENST00000590630 TCEAL1Q15170 157 aa12.17□□□□□ -0.46
LIG3-213ENST00000590630 SPA17Q15506 151 aa12.17□□□□□ -0.46
LIG3-213ENST00000590630 DLG2Q15700 870 aa12.17□□□□□ -0.46
LIG3-213ENST00000590630 CA9Q16790 459 aa12.17□□□□□ -0.46
LIG3-213ENST00000590630 HADHQ16836 314 aaKnown RBP12.17□□□□□ -0.46
LIG3-213ENST00000590630 SMTNL2Q2TAL5 461 aa12.17□□□□□ -0.46
LIG3-213ENST00000590630 PARP15Q460N3 678 aa12.17□□□□□ -0.46
LIG3-213ENST00000590630 TTC31Q49AM3 519 aaPredicted RBP12.17□□□□□ -0.46
LIG3-213ENST00000590630 ACCSLQ4AC99 568 aa12.17□□□□□ -0.46
LIG3-213ENST00000590630 KCNT1Q5JUK3 1230 aa12.17□□□□□ -0.46
LIG3-213ENST00000590630 RFX8Q6ZV50 586 aa12.17□□□□□ -0.46
LIG3-213ENST00000590630 LPCAT2Q7L5N7 544 aa12.17□□□□□ -0.46
LIG3-213ENST00000590630 DSG4Q86SJ6 1040 aa12.17□□□□□ -0.46
LIG3-213ENST00000590630 UMODL1-AS1Q8N2C9 162 aa12.17□□□□□ -0.46
LIG3-213ENST00000590630 ATP11CQ8NB49 1132 aa12.17□□□□□ -0.46
LIG3-213ENST00000590630 ARHGEF2Q92974 986 aaKnown RBP12.17□□□□□ -0.46
LIG3-213ENST00000590630 KCTD15Q96SI1 283 aaPredicted RBP12.17□□□□□ -0.46
LIG3-213ENST00000590630 MTG2Q9H4K7 406 aa12.17□□□□□ -0.46
LIG3-213ENST00000590630 OSGEPQ9NPF4 335 aa12.17□□□□□ -0.46
LIG3-213ENST00000590630 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.17□□□□□ -0.46
LIG3-213ENST00000590630 MBD1Q9UIS9 605 aaPredicted RBP12.17□□□□□ -0.46
LIG3-213ENST00000590630 SCML1Q9UN30 329 aa12.17□□□□□ -0.46
LIG3-213ENST00000590630 CYP8B1Q9UNU6 501 aa12.17□□□□□ -0.46
LIG3-213ENST00000590630 PCDHGA5Q9Y5G8 931 aa12.17□□□□□ -0.46
LIG3-213ENST00000590630 ZSCAN5CA6NGD5 496 aaPredicted RBP12.16□□□□□ -0.46
LIG3-213ENST00000590630 GOLGA6L6A8MZA4 724 aa12.16□□□□□ -0.46
LIG3-213ENST00000590630 H3BRJ5 948 aa12.16□□□□□ -0.46
LIG3-213ENST00000590630 ALOX15BO15296 676 aa12.16□□□□□ -0.46
LIG3-213ENST00000590630 DAPK3O43293 454 aa12.16□□□□□ -0.46
LIG3-213ENST00000590630 IPO7O95373 1038 aaKnown RBP12.16□□□□□ -0.46
LIG3-213ENST00000590630 MT-CO1P00395 513 aa12.16□□□□□ -0.46
LIG3-213ENST00000590630 RARAP10276 462 aa12.16□□□□□ -0.46
LIG3-213ENST00000590630 GOT1P17174 413 aa12.16□□□□□ -0.46
LIG3-213ENST00000590630 GLDCP23378 1020 aa12.16□□□□□ -0.46
LIG3-213ENST00000590630 CD6P30203 668 aa12.16□□□□□ -0.46
LIG3-213ENST00000590630 ACVRL1P37023 503 aa12.16□□□□□ -0.46
LIG3-213ENST00000590630 ARL4AP40617 200 aa12.16□□□□□ -0.46
LIG3-213ENST00000590630 SSR1P43307 286 aaKnown RBP12.16□□□□□ -0.46
LIG3-213ENST00000590630 MAGEA1P43355 309 aa12.16□□□□□ -0.46
LIG3-213ENST00000590630 SERPINH1P50454 418 aaKnown RBP12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms