RNA–Protein interactions for RNA: ENST00000589216.1

PTPN2-208, Transcript of protein tyrosine phosphatase, non-receptor type 2, human

TSL 3

Gene PTPN2, Length 646 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN2-208	ENST00000589216	HS3ST2	Q9Y278	367 aa		10.12	□□□□□ -0.79
PTPN2-208	ENST00000589216	KNL1	Q8NG31	2342 aa		10.12	□□□□□ -0.79
PTPN2-208	ENST00000589216		A0A1W2PP55	124 aa		10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	ANKRD62	A6NC57	917 aa		10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	ATP9B	O43861	1147 aa		10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	MFAP3L	O75121	409 aa		10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	RTN2	O75298	545 aa		10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	DNTT	P04053	509 aa		10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	SERPING1	P05155	500 aa		10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	ACADM	P11310	421 aa		10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	RHOQ	P17081	205 aa		10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	PSMA2	P25787	234 aa		10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	HNRNPH3	P31942	346 aa	Known RBP	10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	DRD3	P35462	400 aa		10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	IRX4	P78413	519 aa		10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	GNA12	Q03113	381 aa		10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	BYSL	Q13895	437 aa	Known RBP	10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	ELAVL3	Q14576	367 aa	Known RBP	10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	E2F5	Q15329	346 aa		10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	ARL13B	Q3SXY8	428 aa		10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	POM121L1P	Q3SYA9	428 aa		10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	TRIM61	Q5EBN2	209 aa		10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	C6orf118	Q5T5N4	469 aa		10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	SPECC1L	Q69YQ0	1117 aa		10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	RWDD4	Q6NW29	188 aa	Known RBP	10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	C22orf39	Q6P5X5	142 aa		10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	LEKR1	Q6ZMV7	388 aa		10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	SLFN11	Q7Z7L1	901 aa		10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	SETD3	Q86TU7	594 aa	Predicted RBP	10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	SYT12	Q8IV01	421 aa		10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	C12orf50	Q8NA57	414 aa	Predicted RBP	10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	OR2I1P	Q8NGU4	316 aa		10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	TBC1D31	Q96DN5	1066 aa		10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	ZNF419	Q96HQ0	510 aa	Predicted RBP	10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	BTBD6	Q96KE9	485 aa		10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	DNAJC7	Q99615	494 aa		10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	SNRNP25	Q9BV90	132 aa	Known RBP	10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	PACSIN1	Q9BY11	444 aa		10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	KLC2	Q9H0B6	622 aa		10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	THAP2	Q9H0W7	228 aa		10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	FBRS	Q9HAH7	460 aa		10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	PARVA	Q9NVD7	372 aa		10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	TMEM248	Q9NWD8	314 aa		10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	DNAI1	Q9UI46	699 aa		10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	SLC25A13	Q9UJS0	675 aa		10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	CDV3	Q9UKY7	258 aa	Known RBP	10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	LUC7L2	Q9Y383	392 aa	Known RBP	10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	CHD8	Q9HCK8	2581 aa		10.11	□□□□□ -0.79
PTPN2-208	ENST00000589216	ANKRD36	A6QL64	1941 aa		10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	ILVBL	A1L0T0	632 aa		10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	TARSL2	A2RTX5	802 aa	Known RBP	10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	MEI4	A8MW99	385 aa		10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	CBX4	O00257	560 aa		10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	CREB3	O43889	395 aa		10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	BNIP3L	O60238	219 aa		10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	NDUFS2	O75306	463 aa		10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	LRCH4	O75427	683 aa		10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	ZNF821	O75541	412 aa	Predicted RBP	10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	SEMA4F	O95754	770 aa		10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	CD160	O95971	181 aa		10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	CFI	P05156	583 aa		10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	CTSL	P07711	333 aa		10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	EIF4A3	P38919	411 aa	Known RBP	10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	OXCT1	P55809	520 aa		10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	SULT2A1	Q06520	285 aa		10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	DLG2	Q15700	870 aa		10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	TTC31	Q49AM3	519 aa	Predicted RBP	10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	EFHC2	Q5JST6	749 aa		10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	SPDYC	Q5MJ68	293 aa		10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	DCAF12L1	Q5VU92	463 aa		10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	LAYN	Q6UX15	382 aa		10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	ZCCHC9	Q8N567	271 aa	Known RBP	10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	NETO2	Q8NC67	525 aa		10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	CHST14	Q8NCH0	376 aa		10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	NETO1	Q8TDF5	533 aa		10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	VOPP1	Q96AW1	172 aa		10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	IQCD	Q96DY2	449 aa		10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	KCTD15	Q96SI1	283 aa	Predicted RBP	10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	SPON2	Q9BUD6	331 aa		10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	C2orf49	Q9BVC5	232 aa	Predicted RBP	10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	TNKS2	Q9H2K2	1166 aa		10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	CAPN10	Q9HC96	672 aa		10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	ATP13A1	Q9HD20	1204 aa		10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	SUN2	Q9UH99	717 aa		10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	PCSK1N	Q9UHG2	260 aa		10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	AP4E1	Q9UPM8	1137 aa		10.1	□□□□□ -0.79
PTPN2-208	ENST00000589216	DCDC2B	A2VCK2	349 aa		10.09	□□□□□ -0.79
PTPN2-208	ENST00000589216	PRR5-ARHGAP8	B1AHC4	643 aa		10.09	□□□□□ -0.79
PTPN2-208	ENST00000589216	C10orf142	B7Z368	130 aa		10.09	□□□□□ -0.79
PTPN2-208	ENST00000589216	CDX4	O14627	284 aa	Predicted RBP	10.09	□□□□□ -0.79
PTPN2-208	ENST00000589216	SLC30A4	O14863	429 aa		10.09	□□□□□ -0.79
PTPN2-208	ENST00000589216	CBFA2T2	O43439	604 aa		10.09	□□□□□ -0.79
PTPN2-208	ENST00000589216	RNASEH2A	O75792	299 aa	Known RBP	10.09	□□□□□ -0.79
PTPN2-208	ENST00000589216	IL1B	P01584	269 aa		10.09	□□□□□ -0.79
PTPN2-208	ENST00000589216	IGHV4-34	P06331	123 aa		10.09	□□□□□ -0.79
PTPN2-208	ENST00000589216	TPM3	P06753	285 aa		10.09	□□□□□ -0.79
PTPN2-208	ENST00000589216	IL1R2	P27930	398 aa		10.09	□□□□□ -0.79
PTPN2-208	ENST00000589216	EPHB2	P29323	1055 aa		10.09	□□□□□ -0.79
PTPN2-208	ENST00000589216	MIP	P30301	263 aa		10.09	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms