RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 IL1BP01584 269 aa19.96■□□□□ 0.79
SS18-209ENST00000578595 GLDCP23378 1020 aa19.96■□□□□ 0.79
SS18-209ENST00000578595 OXTRP30559 389 aa19.96■□□□□ 0.79
SS18-209ENST00000578595 HNRNPH3P31942 346 aaKnown RBP19.96■□□□□ 0.79
SS18-209ENST00000578595 L1CAMP32004 1257 aa19.96■□□□□ 0.79
SS18-209ENST00000578595 ETFBP38117 255 aa19.96■□□□□ 0.79
SS18-209ENST00000578595 MAPKAPK2P49137 400 aa19.96■□□□□ 0.79
SS18-209ENST00000578595 GALCP54803 685 aa19.96■□□□□ 0.79
SS18-209ENST00000578595 LMNB2Q03252 620 aa19.96■□□□□ 0.79
SS18-209ENST00000578595 ZNF33AQ06730 810 aa19.96■□□□□ 0.79
SS18-209ENST00000578595 DLG2Q15700 870 aa19.96■□□□□ 0.79
SS18-209ENST00000578595 CSRP2Q16527 193 aa19.96■□□□□ 0.79
SS18-209ENST00000578595 PPP6R3Q5H9R7 873 aaPredicted RBP19.96■□□□□ 0.79
SS18-209ENST00000578595 DAB2IPQ5VWQ8 1189 aa19.96■□□□□ 0.79
SS18-209ENST00000578595 ZNF783Q6ZMS7 281 aa19.96■□□□□ 0.79
SS18-209ENST00000578595 Q6ZVU0 165 aa19.96■□□□□ 0.79
SS18-209ENST00000578595 METTL3Q86U44 580 aaKnown RBP19.96■□□□□ 0.79
SS18-209ENST00000578595 FNIP1Q8TF40 1166 aa19.96■□□□□ 0.79
SS18-209ENST00000578595 OR8D1Q8WZ84 308 aa19.96■□□□□ 0.79
SS18-209ENST00000578595 CCDC42Q96M95 316 aa19.96■□□□□ 0.79
SS18-209ENST00000578595 SNRNP25Q9BV90 132 aaKnown RBP19.96■□□□□ 0.79
SS18-209ENST00000578595 RSPH9Q9H1X1 276 aaPredicted RBP19.96■□□□□ 0.79
SS18-209ENST00000578595 CATSPERBQ9H7T0 1116 aa19.96■□□□□ 0.79
SS18-209ENST00000578595 VPS45Q9NRW7 570 aa19.96■□□□□ 0.79
SS18-209ENST00000578595 TMEM248Q9NWD8 314 aa19.96■□□□□ 0.79
SS18-209ENST00000578595 CTTNBP2NLQ9P2B4 639 aa19.96■□□□□ 0.79
SS18-209ENST00000578595 NCKAP1Q9Y2A7 1128 aa19.96■□□□□ 0.79
SS18-209ENST00000578595 RAMP2O60895 175 aa19.95■□□□□ 0.78
SS18-209ENST00000578595 MIPP30301 263 aa19.95■□□□□ 0.78
SS18-209ENST00000578595 CST6Q15828 149 aa19.95■□□□□ 0.78
SS18-209ENST00000578595 SLC18A3Q16572 532 aa19.95■□□□□ 0.78
SS18-209ENST00000578595 ERMARDQ5T6L9 678 aa19.95■□□□□ 0.78
SS18-209ENST00000578595 C9orf64Q5T6V5 341 aa19.95■□□□□ 0.78
SS18-209ENST00000578595 TCEAL6Q6IPX3 200 aa19.95■□□□□ 0.78
SS18-209ENST00000578595 RETSATQ6NUM9 610 aa19.95■□□□□ 0.78
SS18-209ENST00000578595 DSG4Q86SJ6 1040 aa19.95■□□□□ 0.78
SS18-209ENST00000578595 SH2D3CQ8N5H7 860 aa19.95■□□□□ 0.78
SS18-209ENST00000578595 PTPRN2Q92932 1015 aa19.95■□□□□ 0.78
SS18-209ENST00000578595 TCEAL3Q969E4 200 aa19.95■□□□□ 0.78
SS18-209ENST00000578595 ARHGEF26Q96DR7 871 aa19.95■□□□□ 0.78
SS18-209ENST00000578595 BTBD6Q96KE9 485 aa19.95■□□□□ 0.78
SS18-209ENST00000578595 CCDC114Q96M63 670 aa19.95■□□□□ 0.78
SS18-209ENST00000578595 PEBP4Q96S96 227 aa19.95■□□□□ 0.78
SS18-209ENST00000578595 OMDQ99983 421 aa19.95■□□□□ 0.78
SS18-209ENST00000578595 ZWILCHQ9H900 591 aa19.95■□□□□ 0.78
SS18-209ENST00000578595 NDFIP2Q9NV92 336 aa19.95■□□□□ 0.78
SS18-209ENST00000578595 WSB2Q9NYS7 404 aaPredicted RBP19.95■□□□□ 0.78
SS18-209ENST00000578595 HPCAL4Q9UM19 191 aa19.95■□□□□ 0.78
SS18-209ENST00000578595 FARP1Q9Y4F1 1045 aaPredicted RBP19.95■□□□□ 0.78
SS18-209ENST00000578595 FAM47DPA6NHR8 397 aa19.94■□□□□ 0.78
SS18-209ENST00000578595 EEF2KO00418 725 aaKnown RBP19.94■□□□□ 0.78
SS18-209ENST00000578595 MID1O15344 667 aa19.94■□□□□ 0.78
SS18-209ENST00000578595 LRCH4O75427 683 aa19.94■□□□□ 0.78
SS18-209ENST00000578595 RNASEH2AO75792 299 aaKnown RBP19.94■□□□□ 0.78
SS18-209ENST00000578595 CFIP05156 583 aa19.94■□□□□ 0.78
SS18-209ENST00000578595 SRCP12931 536 aa19.94■□□□□ 0.78
SS18-209ENST00000578595 ITPKAP23677 461 aa19.94■□□□□ 0.78
SS18-209ENST00000578595 GJC1P36383 396 aa19.94■□□□□ 0.78
SS18-209ENST00000578595 ACVRL1P37023 503 aa19.94■□□□□ 0.78
SS18-209ENST00000578595 RECQLP46063 649 aaPredicted RBP19.94■□□□□ 0.78
SS18-209ENST00000578595 ZNF75DP51815 510 aa19.94■□□□□ 0.78
SS18-209ENST00000578595 ZBTB16Q05516 673 aa19.94■□□□□ 0.78
SS18-209ENST00000578595 SFSWAPQ12872 951 aaKnown RBP19.94■□□□□ 0.78
SS18-209ENST00000578595 ELAVL3Q14576 367 aaKnown RBP19.94■□□□□ 0.78
SS18-209ENST00000578595 SMTNL2Q2TAL5 461 aa19.94■□□□□ 0.78
SS18-209ENST00000578595 SYCP2LQ5T4T6 812 aa19.94■□□□□ 0.78
SS18-209ENST00000578595 ZNF564Q8TBZ8 553 aaPredicted RBP19.94■□□□□ 0.78
SS18-209ENST00000578595 FOXJ1Q92949 421 aa19.94■□□□□ 0.78
SS18-209ENST00000578595 CHP1Q99653 195 aa19.94■□□□□ 0.78
SS18-209ENST00000578595 NCAPGQ9BPX3 1015 aa19.94■□□□□ 0.78
SS18-209ENST00000578595 PACSIN1Q9BY11 444 aa19.94■□□□□ 0.78
SS18-209ENST00000578595 PABPC3Q9H361 631 aaKnown RBP19.94■□□□□ 0.78
SS18-209ENST00000578595 SPTLC3Q9NUV7 552 aa19.94■□□□□ 0.78
SS18-209ENST00000578595 FBXL12Q9NXK8 326 aa19.94■□□□□ 0.78
SS18-209ENST00000578595 IP6K2Q9UHH9 426 aa19.94■□□□□ 0.78
SS18-209ENST00000578595 CFAP54Q96N23 3096 aa19.94■□□□□ 0.78
SS18-209ENST00000578595 A0A1W2PP55 124 aa19.93■□□□□ 0.78
SS18-209ENST00000578595 SSU72P8A0A1W2PR75 194 aa19.93■□□□□ 0.78
SS18-209ENST00000578595 K7ERQ8 282 aa19.93■□□□□ 0.78
SS18-209ENST00000578595 FGF10O15520 208 aaPredicted RBP19.93■□□□□ 0.78
SS18-209ENST00000578595 ATP9BO43861 1147 aa19.93■□□□□ 0.78
SS18-209ENST00000578595 MT-CO1P00395 513 aa19.93■□□□□ 0.78
SS18-209ENST00000578595 CYP1A2P05177 515 aa19.93■□□□□ 0.78
SS18-209ENST00000578595 H2AFZP0C0S5 128 aa19.93■□□□□ 0.78
SS18-209ENST00000578595 DNA2P51530 1060 aa19.93■□□□□ 0.78
SS18-209ENST00000578595 MAPK8IP2Q13387 824 aaPredicted RBP19.93■□□□□ 0.78
SS18-209ENST00000578595 PIGHQ14442 188 aaPredicted RBP19.93■□□□□ 0.78
SS18-209ENST00000578595 ARID5BQ14865 1188 aa19.93■□□□□ 0.78
SS18-209ENST00000578595 POLD3Q15054 466 aaPredicted RBP19.93■□□□□ 0.78
SS18-209ENST00000578595 CA9Q16790 459 aa19.93■□□□□ 0.78
SS18-209ENST00000578595 POM121L1PQ3SYA9 428 aa19.93■□□□□ 0.78
SS18-209ENST00000578595 SPDYCQ5MJ68 293 aa19.93■□□□□ 0.78
SS18-209ENST00000578595 C22orf39Q6P5X5 142 aa19.93■□□□□ 0.78
SS18-209ENST00000578595 H2AFVQ71UI9 128 aa19.93■□□□□ 0.78
SS18-209ENST00000578595 NLRP14Q86W24 1093 aa19.93■□□□□ 0.78
SS18-209ENST00000578595 GAS2L3Q86XJ1 694 aa19.93■□□□□ 0.78
SS18-209ENST00000578595 SLC41A1Q8IVJ1 513 aa19.93■□□□□ 0.78
SS18-209ENST00000578595 RTL3Q8N8U3 475 aaKnown RBP19.93■□□□□ 0.78
SS18-209ENST00000578595 HSPH1Q92598 858 aa19.93■□□□□ 0.78
SS18-209ENST00000578595 BTBD1Q9H0C5 482 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms